Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0842 ATGGTTGTTGGTACTCTCCGTGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCTGTGAACAGGACCTGA 162 0.4383 MVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0842 53 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN G 2 53 - -
Ssu4g0842 53 SMART Sm3 1 46 IPR001163 -
Ssu4g0842 53 Pfam LSM domain 2 45 IPR001163 -
Ssu4g0842 53 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 2 53 IPR044641 -
Ssu4g0842 53 Gene3D - 1 50 - -
Ssu4g0842 53 SUPERFAMILY Sm-like ribonucleoproteins 2 50 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0842 Ssu-Chr4 13298687 13298956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0842 K11099 - gmx:100305530 106.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0842 4 13298687 13298956 Ssu4g0842 4 13298687 13298956 ECH