LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g0839	ATGTCTGGGCGCCATGAGAAAGAGAAGGGTGTCAACGTTCAGGTCCTCCTCCGTTGCAGGCCGTTTAGTGACGAAGAGTTACGAAGCAACGCGCCGCAAGTCGTGACTTGCAATGAATACAATAGAGAAGTGGCCGTGTCTCAGAGCATCGCCGGCAAGCACATCGACAGGGTTTTCACCTTCGATAAGGTTTTTGGTCCTTCTGCACAGCAAAAGGATCTTTATGAACAAGCTGTTACTCCGATAGTCAATGAAGTTCTAGAGGGCTTTAATTGTACTATATTTGCGTATGGTCAAACTGGTACGGGAAAAACCTACACAATGGAAGGGGAATGCAAGAGGTCCAAGAGTGGTCCCAATGGAGAGTTGCCTCCAGAAGCTGGAGTCATTCCTAGGGCTGTCAAGCAAATTTTTGACACACTTGAGAGCCAGAATGCTGAATATAGTGTGAAGGTCACttttttggaattgtataaCGAAGAGATTACTGACTTGCTTGCCCCAGAGGAGATTTCAAAGGTTTCTTTGGAGGAGAAGCAGAAAAAGCAGCTGCCTCTCATGGAGGATGGTAAAGGTGGAGTTCTTGTAAGAGGCTTGGAGGAAGAGATTGTGACAAGTGCTTGTGAGATTTTTACTCTTCTGGAGAGAGGGTCTTCCAAACGACGAACTGCGGAAACTTTGTTGAACAAACAGTCAAGTCGGTCGCATTCGCTGTTTTCAATTACAATCCACATCAAGGAAGCTACCCCAGAGGGTGAAGAACTAATAAAATGTGGCAAACTTAATTTGGTGGATCTAGCTGGGTCAGAAAATATATCTCGTTCTGGTGCTAGGGAGGGTCGTGCAAGGGAAGCTGGGGAAATTAACAAAAGTTTGCTTACTTTAGGGCGAGTGATCAATGCACTAGTGGAGCACCTGGGTCACATTCCttacagGGATAGTAAGTTGACGCGTTTACTGCGTGATTCACTTGGGGGAAGAACCAAGACATGCATCATAGCAACAGTGTCTCCTGCTGTTCATTGCTTAGAGGAAACTTTGAGCACGCTGGATTATGCACATAGGGCAAAGCACATCAAAAATAAGCCCGAGgttaaccaaaaaatgatgaaatcaaCACTTATCAAGGATCTTTATGGTGAAATCGAACGCCTTAAGGCAGAGGTTTATGCTACACGTGAAAAAAATGGAGTCTATATTCCAAAGGAAAGATACTATCAGGAGGAGAGTGAAAAGAAGGCTATGTCAGATCAAATTGAGCAGATGGGGGTCACAATAGAAACTCAACAGAAGCAACTTGAGGATTTGCAAAACAAATATGTTGACCAAATTCGGCAGTGTTCTGATTTGAGCAACAAACTTGATAGTACTGAGAAAAACTTGAGCAAGACTAGCAAGTTGCTTGCGAACACAGAGGAGGAATTAAAGAAATGTCAGTATACCCTGAAAGAAAAAGATTTCATCATTTCTGAGCAGAGAAAAGCAGAAAATGCTCTGGCTCATCAAGCATGTGTTTTACGATCTGATTTGGAGAAAGCTCTTCAGGATAATGCTTCCTTATTTTCGAAAATTGGTAGAGAAGATAGACTGAACTCAGATAACAGAGCTGTAGTGAACAATTTCCAAGCGGAGCTTGCTCAGCAGGTTGGTTCTCTTTGCAACACTGTTGCAACATCATTGTCTGAACAGAATGAACATCTAGAAGGTGTGAAGAAGCTCTGTCATTCTTTTTTGGACGTTCATGATAAGGCGGTtgttaatttgaaaaagaaagtgacATGTCTGAGGGCCTTGTATATATCTCATATTGAGGCAGCGCAAAATGTTGTGCGCTTGCATAAGGCGAGCTCTGATGCTACCTTGGAGGAACTTTCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAATTTCTTGCATCTGAGGCCACCGAAGCTGGTTCAATATTTGATGATGTTCAGAGTTCCCTTTCAACTCAGCACGGTGAATTGGCACTTTTTGCTAGGGAACTACGCAATAGATTCAATCTCAGCCTTGAACAAATAAAGGATATCTCTGAGCGATCTCAAGAATTTGTGGATAAGCTTTTTGAAGAATCAAAAAAGCTTGAAGACTTCGCATTACAGGCTGACCAAATGCAAATGAAGAGCATTGATGAGTTTAAGAAAGCATATGAgGAGCAGTCAAAATCTGATACAGAGAAACTTATCGCTGATATGACTAGTTTAGTTTCTGATCACATGCGGCGACAACTGGATCTGGTAGATGCTAAGCTTGTTGATCTTAGAGAAAGTGGCATCAAGAACAAGTCATTCTTGGATGGACATGTGTCATCAATGGGAGATATTGTGACCAATGCAAAGAGGAAATGGCAGGCCTTTTGTGTACAAGCAGAAAAAGATGCGAAAGACACTGCTGATTATTCTGCAGCAAAGCATTGTCGTATGGAGTTACTCATGCAGAAGAGTGTTAATACTGCTCAATCGGCTTTCGAACATACAAAGAGGACACATGAGGCTGTAAATGAGATGGGGACCAAACTTATTTCTGCAACAGAATCAATTATCAGGAATGCTACCGATAACAATGTGCAACATGTCATTGAGGTCGATTCTGCACGAGTTGCAGCAGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGAGCAGTTTGATGTCTCGTCTGCACAAGAGCGGGAGTCCATATCTGGCGTATTAAATGTGGTGAGAACACATGCAAATACACTCGAGACGCTACGAGAGGATCACGCTGGCCAAGCTGCTTCCATTGAACACTCGGCAAGCGAAACTTTTCGACAGCAGTACAGGGACTATGAGCCTAGCGGTACAACACCTATAAGGTGTGAGCCTGATGTTCCGACAAAGGGGACAATAGAGTCTCTTCGATCCTTGCCAATGGAAGACCTTCTTGAGGAATTCCGGGAAAATAATCCATATGAATCTTCTGATGTAAAGGAGTTGAAACCATCCCTTATTCCACGTTCGCCGCTTAGTCTGCTGAACTAA	3030	0.4238	MSGRHEKEKGVNVQVLLRCRPFSDEELRSNAPQVVTCNEYNREVAVSQSIAGKHIDRVFTFDKVFGPSAQQKDLYEQAVTPIVNEVLEGFNCTIFAYGQTGTGKTYTMEGECKRSKSGPNGELPPEAGVIPRAVKQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPEEISKVSLEEKQKKQLPLMEDGKGGVLVRGLEEEIVTSACEIFTLLERGSSKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIKNKPEVNQKMMKSTLIKDLYGEIERLKAEVYATREKNGVYIPKERYYQEESEKKAMSDQIEQMGVTIETQQKQLEDLQNKYVDQIRQCSDLSNKLDSTEKNLSKTSKLLANTEEELKKCQYTLKEKDFIISEQRKAENALAHQACVLRSDLEKALQDNASLFSKIGREDRLNSDNRAVVNNFQAELAQQVGSLCNTVATSLSEQNEHLEGVKKLCHSFLDVHDKAVVNLKKKVTCLRALYISHIEAAQNVVRLHKASSDATLEELSSVISSNGHSIEEFLASEATEAGSIFDDVQSSLSTQHGELALFARELRNRFNLSLEQIKDISERSQEFVDKLFEESKKLEDFALQADQMQMKSIDEFKKAYEEQSKSDTEKLIADMTSLVSDHMRRQLDLVDAKLVDLRESGIKNKSFLDGHVSSMGDIVTNAKRKWQAFCVQAEKDAKDTADYSAAKHCRMELLMQKSVNTAQSAFEHTKRTHEAVNEMGTKLISATESIIRNATDNNVQHVIEVDSARVAAEEDVAKNSEDLLEQFDVSSAQERESISGVLNVVRTHANTLETLREDHAGQAASIEHSASETFRQQYRDYEPSGTTPIRCEPDVPTKGTIESLRSLPMEDLLEEFRENNPYESSDVKELKPSLIPRSPLSLLN	1009

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g0839	1009	Coils	Coil	375	395	-	-
	Ssu4g0839	1009	PRINTS	Kinesin heavy chain signature	89	110	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	PRINTS	Kinesin heavy chain signature	260	278	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	PRINTS	Kinesin heavy chain signature	226	243	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	PRINTS	Kinesin heavy chain signature	309	330	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	Pfam	Kinesin motor domain	18	359	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	12	399	IPR027417	-
	Ssu4g0839	1009	PANTHER	125 KDA KINESIN-RELATED PROTEIN-LIKE	1	1008	-	-
	Ssu4g0839	1009	Coils	Coil	419	474	-	-
	Ssu4g0839	1009	ProSitePatterns	Kinesin motor domain signature.	259	270	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Ssu4g0839	1009	ProSiteProfiles	Kinesin motor domain profile.	12	359	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	SMART	kinesin_4	10	367	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu4g0839	1009	CDD	KISc_BimC_Eg5	10	368	-	-
	Ssu4g0839	1009	Gene3D	Kinesin motor domain	2	390	IPR036961	-
	Ssu4g0839	1009	PANTHER	KINESIN-LIKE PROTEIN KIF11	1	1008	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g0839	Ssu-Chr4	13248708	13254940	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g0839	12	389	Miscellaneous Gene Families	AT5G06670	37.596	4.66e-66	234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g0839	K10398		-	gmx:100800246	1811.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g0839	4	13248708	13254940	Ssu4g0839	4	13248708	13254940	ECH