Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0838 ATGGTTCTCCCAAAGTGTCTCACCATCTCTGTAGTGACTTTTTCCCTTATCGTGTTACTGATCAACAATGGCGTTGaagcttttcataaaatatatccCCATCTTCAATCTGTTTCAGCGATTTCCGTGAGCGCAGTGCACAGAACTGGATACCATTTTCAACCTCTTAAGAACTGGATCAATGATCCAAATGGGCCCATGTACTACCATGGAGTTTACCATCTGTTCTACCAATACAACCCGAAAGGCTCAGTGTGGGGTAACATCGTGTGGGCCCACTCAGTATCAACGGATCTTATAAACTGGAAGGCCCTTGAACCCGCCATTTACCCATCCAAGCCCTTTGACAAGTTCGGGTGCTGGTCCGGGTCGGTCACCATAGTCCCGGGCAAGGGACCCGTGATCCTCTACACCGGGATTATCGACGACAAACAAACTCAGGAACAATGCTACGCCGTACCCGAAGATCCAAACGACCCGTTTCTTCGAAAATGGGTAAAACCCGACAAATTTAACCCGATTCTGGTTGCCGACAAAGGCGTAAACGGCAGCGCGTTTCGTGACCCAACGACAGCTTGGTTGAGCAAGGATGGGCAATGGAGGATATTGGTGGGTAGTAGAAGGAAGCGTAGAGGGATGGCTTATTTGTATAGGAGCAAGGATTTTATGACGTGGGTTCGGGCCAAACACCCGATCCATTCCAAGGGTGAAACGGGCATGTGGGAGTGCCCAGATTTTTACCCGGTTTCGGTTAGAGGCAATCAAGGGTTGGACACGTCCGTGGTGGGGAATCATGTGAAGCACGTGTTGAAGAATAGTCTTGACATGACTAGGTTTGAGTACTATACTCTTGGGACGTATTTTGAGAATAAGGATAAGTATGTCCCGGATAACACGTCAGTGGATGGCTGGGGTGGACTTAGGTATGATTATGGTAATTTCTATGCTTCCAAGTCATTTTTTGACCACAGCAGGAGCCGAAGGATCTTGTGGGGTTGGGCAAACGAGTCTGATTCCAAGGAAGACGATGTTCGCAAAGGATGGGCAGGAATTCAgGCGATTCCGCGAACCTTGTGGCTCGATTCTACTGGGAGACAATTGATACAATGGCCGGTTGAAGAATTAAATAGTCTCAGAGGGAAGGAAGTTAACATGAACCATGAAAAGCTCGAGAAGGGAGATTATGTTGAAGTAAAAGGAATCACTGCTGCCCAGGCAGATGTGGAAGTTACATTCTCATTTTCAAGCTTGGAGAAGGCAGAGGCATATGATCCTAAGTGGGTAAACGCGCAGGATCTCTGTGCCCAAAAGGGTTCAAAACTTCAAGGTGGGGTTGGACCATTTGGACTTCTGACTTTGGCTTCCCAAAATCTGGAGGAGTTCACTCCTGTGTTCTTCAGAATTTTCAAAGGTCCAAATAAGCATGTGATTCTCTTATGCTCCGATGCGAGAAGTTCCTCTTTGAAGAGTAATTTGTACAAGCCATCATTTGCTGGCTTTGTAGACGTGGATTTGGCCACTAATAAGAAACTTTCTCTTAGGAGTTTGATTGATCACTCAGTAGTGGAGAGTTTTGGAGCAGGAGGGAAGACAAACATTTTGTCTCGGGTTTATCCACAGTTAGCAGTGACGAATCAAGCCCACTTATTTGTGTTCAACAACGGTACTGAGCCAATCACCGTGGAAAACCTCAAAGCATGGAGCATGAAATCTGCTGAAATAAATGAACAGCCAGAAATCAATTAG 1746 0.4593 MVLPKCLTISVVTFSLIVLLINNGVEAFHKIYPHLQSVSAISVSAVHRTGYHFQPLKNWINDPNGPMYYHGVYHLFYQYNPKGSVWGNIVWAHSVSTDLINWKALEPAIYPSKPFDKFGCWSGSVTIVPGKGPVILYTGIIDDKQTQEQCYAVPEDPNDPFLRKWVKPDKFNPILVADKGVNGSAFRDPTTAWLSKDGQWRILVGSRRKRRGMAYLYRSKDFMTWVRAKHPIHSKGETGMWECPDFYPVSVRGNQGLDTSVVGNHVKHVLKNSLDMTRFEYYTLGTYFENKDKYVPDNTSVDGWGGLRYDYGNFYASKSFFDHSRSRRILWGWANESDSKEDDVRKGWAGIQAIPRTLWLDSTGRQLIQWPVEELNSLRGKEVNMNHEKLEKGDYVEVKGITAAQADVEVTFSFSSLEKAEAYDPKWVNAQDLCAQKGSKLQGGVGPFGLLTLASQNLEEFTPVFFRIFKGPNKHVILLCSDARSSSLKSNLYKPSFAGFVDVDLATNKKLSLRSLIDHSVVESFGAGGKTNILSRVYPQLAVTNQAHLFVFNNGTEPITVENLKAWSMKSAEINEQPEIN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0838 581 Pfam Glycosyl hydrolases family 32 C terminal 374 568 IPR013189 -
Ssu4g0838 581 SUPERFAMILY Arabinanase/levansucrase/invertase 43 372 IPR023296 -
Ssu4g0838 581 SMART glyco_32 52 529 IPR001362 GO:0004553|GO:0005975
Ssu4g0838 581 Pfam Glycosyl hydrolases family 32 N-terminal domain 52 371 IPR013148 -
Ssu4g0838 581 CDD GH32_Fruct1-like 58 360 - -
Ssu4g0838 581 SUPERFAMILY Concanavalin A-like lectins/glucanases 371 572 IPR013320 -
Ssu4g0838 581 Gene3D Glycosyl hydrolase domain; family 43 56 384 IPR023296 -
Ssu4g0838 581 Gene3D - 385 569 - -
Ssu4g0838 581 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE PROTEIN 2 574 - -
Ssu4g0838 581 ProSitePatterns Glycosyl hydrolases family 32 active site. 52 65 IPR018053 GO:0004553|GO:0005975
Ssu4g0838 581 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0838 Ssu-Chr4 13194192 13200440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0838 24 569 Glycoside Hydrolase AT2G36190 64.875 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0838 K01193 - gmx:100799008 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0838 4 13194192 13200440 Ssu4g0838 4 13194192 13200440 ECH