Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0834 ATGTTTTCTGCTAGCATTTTGCTACAGATTCTGGCATGTGCAATATATAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGATCCACTCAATTTCTAATGAGCCGAGATGGTGGGGGTTGGATAGATGCTGCAAAATTTTTGACTGGAGCATCAGCTGTTGGGAGCATAGCCATTCCTATAATCCTCAAGCATGCTCATATGATTGAGACAGGCGCGATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTTTATGTTTCCACCAAGCCAGCCTTGATGATGATTGGTAA 342 0.4211 MFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLMSRDGGGWIDAAKFLTGASAVGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQASLDDDW 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0834 113 PANTHER LEPTIN RECEPTOR-RELATED 1 112 IPR007262 -
Ssu4g0834 113 Pfam Vacuolar protein sorting 55 2 107 IPR007262 -
Ssu4g0834 113 PANTHER RH04491P 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0834 Ssu-Chr4 13093759 13096198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0834 1 108 EF-hand Containing Proteins AT1G32410 56.757 1.81e-39 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0834 - - gmx:100800586 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0834 4 13093759 13096198 Ssu4g0834 4 13093759 13096198 ECH