Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0832 ATGGCAGGGGTGGAGAATAGTAACGGGAACGCGAGTGAAAGGGAGTTAGCGGGAAATAGCGATAACGGTTTTGTGGAAGTTGCAGAGCCTAGTGGCTCTGCTGGTCGTGAAGGAAACGATACCGTTTCTTATGCGAACGTGCTGCGTTCGAGGAACAAGTTTGTCGATGCTCTCGCTCTCTACGAGCGTGTATTGGAGAGTGATGGTGCAAATGTAGAGGCTCTCATTGGAAAAGGGATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCATTTGAGAGTTTTTCCGAGGCCATCAAGCTGGATCCTCAAAATGCGTGTGCCCTCACGCATTGCGGTATTCTGCACAAGGACGAGGGTCGCCTTGTAGAGGCTGCTGAGTCATATCAGAAGGCTTTAGGAGTGGATCCTTCATACAAAGTAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACACAAAGCTTGCAGGAAACACTCAGGAtggaattcaaaaatattttgaagcccTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTCAGTTTCTATGAAAATGCTGCATCAGAGAGGCCTATGTATGCTGAAGCATATTGCAATATGggtgtgatttttaaaaatcgtGGTGATTTGGAATCGGCTATTACTTGTTATGAGAGGTGTTTAACTGTTTCACCTAACTTCGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTGGGAACAAAGGTTAAATTGGAGGGGGATATCAACCGAGGTGTGGCTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTTGCCTTTCACTTCAATCGACATTGTGCGGAAGCCTGTAACAATCTCGGAGTTATATATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGcTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCATTAAATAACCTTGGTGTTGTATACACAGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCGAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAATCGCTTGCTTGCAATGAATTACATAGAAGAAGGACATGATGACACACTTTTTGAGATTCACAGGGACTGGGGTAGGCGATTCATGGGACTATATCCACAGTACACATCATGGGACAACTCAAAAGATCCTGAACGGCCCCTTGTGATAGGCTATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTCGTAGAAGCACCCCTTGTCTATCATGACTACTCCAAGTTCAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATACAAAAACCATTAAATTTAGAGAGAAAGTTTTAAAGAAGGGTGGTATTTGGAAAGATATTTATGGAATTGATGAAAAGAAGGTTGCCAACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACAGGTCATACTGCAAACAATAAATTGGGAATGATGGCATGTCGGCCTGCACCAATTCAGCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACCGATTCACTGGTGGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGATTGCCAGAATGCTTCCTTTGCTACACCCCTTCCCCTGAGGCTGGTCCTGTTTGTCCAACACCCGCTCTTTCCAATGGTTTCATCACATTTGGTAGTTTCAACAATCTGGCCAAGATTACACCAAAGGTATTGCAGGTTTGGGCGAGGATACTGTGTGCAGTTCCAAATTCCCGCCTTGTAGTGAAATGTAAACCATTTTGCTGTGATAGTGTGCGACAGAGATTCCTTTCAACACTAGAGCAGTTAGGTTTAGAACCACTACGTGTTGATCTTTTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCCTATGCtggaacaacaacaacatgcgAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTACATGCACACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCCAGAAATGAAGATGAATACGTTGAATTGGCTCAGCAGTTGGCCTCTGACATTTACGCACTACATAATTTGAGAATGAGTCTGCGAGATCTAATGTCCAAGTCCCCTATGTGTGATGGTGCAAAATTTGTCCTAGGTCTAGAATCAACATACAGAAATATGTGGCACAGGTATTGTAAAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTACAAGAAGTTGCTACTGGTGACCTGTCAAATAAGAATTCTGAGCCAACAAGGACTGTAAACTCAAGGGAGGACAGTCCTGGATCTGTCAAGGCCAATGGATTTAATACAATGCCCGTGTCAAAGCTTAACATACACAGCTGCGAAGAAAACTGTGGGTCATTGAATCACAGTAGTAAACAAGGAAAGAGGAGTTAA 2757 0.4095 MAGVENSNGNASERELAGNSDNGFVEVAEPSGSAGREGNDTVSYANVLRSRNKFVDALALYERVLESDGANVEALIGKGICLQMQNKGRLAFESFSEAIKLDPQNACALTHCGILHKDEGRLVEAAESYQKALGVDPSYKVAAECLAIVLTDIGTNTKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALSFYENAASERPMYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNRHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEIHRDWGRRFMGLYPQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFVEAPLVYHDYSKFKVIVYSAVVKADTKTIKFREKVLKKGGIWKDIYGIDEKKVANMVREDQVDILVELTGHTANNKLGMMACRPAPIQQVTWIGYPNTTGLPTIDYRITDSLVDPPETKQKHVEELVRLPECFLCYTPSPEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDIYALHNLRMSLRDLMSKSPMCDGAKFVLGLESTYRNMWHRYCKGDVPSLKRMELLQEVATGDLSNKNSEPTRTVNSREDSPGSVKANGFNTMPVSKLNIHSCEENCGSLNHSSKQGKRS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0832 918 MobiDBLite consensus disorder prediction 859 889 - -
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 324 357 IPR019734 GO:0005515
Ssu4g0832 918 ProSiteProfiles TPR repeat region circular profile. 181 212 - -
Ssu4g0832 918 SMART tpr_5 106 139 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 290 323 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 181 214 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 324 357 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 38 71 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 72 105 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 392 425 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 147 180 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 256 289 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 358 391 IPR019734 GO:0005515
Ssu4g0832 918 SMART tpr_5 215 248 IPR019734 GO:0005515
Ssu4g0832 918 SUPERFAMILY TPR-like 40 264 IPR011990 GO:0005515
Ssu4g0832 918 Gene3D Tetratricopeptide repeat domain 36 150 IPR011990 GO:0005515
Ssu4g0832 918 Gene3D Tetratricopeptide repeat domain 261 363 IPR011990 GO:0005515
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 358 391 IPR019734 GO:0005515
Ssu4g0832 918 MobiDBLite consensus disorder prediction 1 17 - -
Ssu4g0832 918 Pfam Tetratricopeptide repeat 324 357 IPR001440 GO:0005515
Ssu4g0832 918 Pfam Tetratricopeptide repeat 392 424 IPR001440 GO:0005515
Ssu4g0832 918 Pfam Tetratricopeptide repeat 215 248 IPR001440 GO:0005515
Ssu4g0832 918 MobiDBLite consensus disorder prediction 1 40 - -
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 106 139 IPR019734 GO:0005515
Ssu4g0832 918 Gene3D - 462 639 - -
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 392 425 IPR019734 GO:0005515
Ssu4g0832 918 Pfam Tetratricopeptide repeat 181 209 IPR019734 GO:0005515
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Ssu4g0832 918 SMART sel1 392 423 IPR006597 -
Ssu4g0832 918 SMART sel1 324 355 IPR006597 -
Ssu4g0832 918 SMART sel1 290 321 IPR006597 -
Ssu4g0832 918 SMART sel1 181 212 IPR006597 -
Ssu4g0832 918 SUPERFAMILY TPR-like 269 335 IPR011990 GO:0005515
Ssu4g0832 918 Pfam Tetratricopeptide repeat 45 106 - -
Ssu4g0832 918 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 35 852 - -
Ssu4g0832 918 ProSiteProfiles TPR repeat region circular profile. 324 356 - -
Ssu4g0832 918 Pfam Tetratricopeptide repeat 360 385 - -
Ssu4g0832 918 Gene3D Glycogen Phosphorylase B; 644 818 - -
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Ssu4g0832 918 ProSiteProfiles TPR repeat profile. 72 105 IPR019734 GO:0005515
Ssu4g0832 918 Gene3D Tetratricopeptide repeat domain 151 260 IPR011990 GO:0005515
Ssu4g0832 918 ProSiteProfiles TPR repeat region circular profile. 392 424 - -
Ssu4g0832 918 ProSiteProfiles TPR repeat region circular profile. 215 247 - -
Ssu4g0832 918 Pfam Glycosyl transferase family 41 468 629 IPR029489 -
Ssu4g0832 918 Pfam Glycosyl transferase family 41 646 825 IPR029489 -
Ssu4g0832 918 Gene3D Tetratricopeptide repeat domain 364 449 IPR011990 GO:0005515
Ssu4g0832 918 SUPERFAMILY TPR-like 323 793 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0832 Ssu-Chr4 13039470 13052061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0832 200 894 Glycosyltransferase AT3G11540 65.043 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0832 K09667 - gmx:100779014 1726.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0832 4 13039470 13052061 Ssu4g0832 4 13039470 13052061 ECH