Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0829 ATGTCTCAGACGAAGAAATTGACGCCGAATCTGGATCAGCAGAGCACGAAGGTGCTGAATCTCACAGTGCTGCAGCGAATCGATCCGTTCATCGACGAGATTCTCTTCACCGCCGCGCATGTCTCTTTCTACGATTTCAACATCGAAAGCAATCAGTGGAGTCGCAAGGATGTTGAAGGATCTCTCTTCGTTGTCAAGAGGAATTCACAACCACGGTTTCAGTTTATCGTAATGAATCGACGAAATACAGATAACCTAGTGGAGAATCTATTGGATTTTGAGTATGAACTTAAAAAGCCGTACCTATTATATCGGAATGCAGCTCAAGAAGTTAATGGTATATGGTTTTACAATCCAGACGAATGTGAGGAAGTTGCAAATCTCTTTAACAGGATACTTAATGCTTACCCAAAGGCACCTCCAAACACAATAATGCCTGCTAGCAAAAGTGAGTCTGAGGAACTTCAGCCAGTATCAATTATACCAGAAAGCCCTCTAGAGTCATCTTCAGCTGCTGCTTCTGCAACCGATGCTGTTGAAGATCCTGTATTTACAAACTTCTTCAGTACATTGAAGGTTAGTGGAAATTATGCTTCCAATGTAGAAAATTTTGGACAGCATTCTGTGACTGTCACTTCTACTGCTCCTAGTGGTTTATTGTCTCGTGCACCTACTGTGCAAATACCATCTGCCTCTCATTCAACTTCATCTATATCAGGCTTCCCCCTTGACTCTCTTGAAACAGTCAAGAGTGGCAATCAAGTCATTAATCTTATTAAGCCTTCTACATTTTTTGCATCCACTTCTTCATCTTCACTGTTAGTTCCACCTATTTCTTCATCTGGGCCGCCTAGTGCAGTTGTTCATCATTCCCTGAATCTGCCACGCCAATATGGCACTCCAGTACTTCAACCCTTCCCACCCCCTAATCTTCCCCCTTCTCTTACCCCTATTTCAAGCTCTACTCCAAATAGACCTGTTATCAGCAGGGATAAAGTTCATGATGCACTTTTATCATTGGTTCAGGATGACCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATTCATGA 1083 0.4247 MSQTKKLTPNLDQQSTKVLNLTVLQRIDPFIDEILFTAAHVSFYDFNIESNQWSRKDVEGSLFVVKRNSQPRFQFIVMNRRNTDNLVENLLDFEYELKKPYLLYRNAAQEVNGIWFYNPDECEEVANLFNRILNAYPKAPPNTIMPASKSESEELQPVSIIPESPLESSSAAASATDAVEDPVFTNFFSTLKVSGNYASNVENFGQHSVTVTSTAPSGLLSRAPTVQIPSASHSTSSISGFPLDSLETVKSGNQVINLIKPSTFFASTSSSSLLVPPISSSGPPSAVVHHSLNLPRQYGTPVLQPFPPPNLPPSLTPISSSTPNRPVISRDKVHDALLSLVQDDQFIDMMFQALLKVSHS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0829 360 PANTHER TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 1 357 IPR010334 GO:0000290|GO:0008047|GO:0043085
Ssu4g0829 360 Pfam Dcp1-like decapping family 17 130 IPR010334 GO:0000290|GO:0008047|GO:0043085
Ssu4g0829 360 CDD EVH1-like_Dcp1 19 133 - -
Ssu4g0829 360 SUPERFAMILY PH domain-like 19 138 - -
Ssu4g0829 360 PANTHER DECAPPING ENZYME 1A, PUTATIVE-RELATED 1 357 - -
Ssu4g0829 360 Gene3D - 7 135 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0829 Ssu-Chr4 13012488 13016045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0829 K12611 - gmx:100786833 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0829 4 13012488 13016045 Ssu4g0829 4 13012488 13016045 ECH