Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0824 ATGACACCTAACAAGTTGGTGCCTCTACTAAAGGATGAAATACCAAACATGAGAAAAGAACACAACACAGGTAATGCCTACTTATTTCCTTCTTCTGCGGCTCTTGCAGAGCTAAAGCAACGCTCGCGTTCAGCCCAAAATGGGCTTTACAGAACAAAGTTCTTCACCCAAATACTCGATCACTTCAATTTCAATCCCCAGAGCtatcaaacttttcaacaaaGGTATCTCATCAACGATACCTATTGGGGTGGTGCCAAGAAGAAGGCTCCCATCTTTGTCTACACAGGAAATGAAGGGGTCATAGAATGGTTCGCACAGAACACGGGCTTTATGTTCGAAAATGCTCCTTCTTTTCAAGCCCTTTTGGTTTTTATTGAGCATAGATTTTATGGAAAATCAATACCATTTGGGGGAAACAAGACGGTTGCATATGCAAATGCTAGCACACTTGGGTATCTTACCTCCACACAGGCGTTAGCCGATTATGCCACTCTCATAATTGATCTGAAGAAGAATTTGTCAGCAAATGACTCGCCTGTTGTAGTGTTTGGAGGATCCTATGGAGGAATGTTGGCTGCTTGGTTCAGGATGAAGTATCCGCACGTTGCAATTGGAGCTCTAGCATCCTCTGCCCCAATCCTCCACTTCATGGATTTGGTTTCGCCAGATATCTTCAACAGCATCGTCACACAAGACTACAGGAGCGAGAGTGAGAATTGTTACAAAGTTTTAAAGGGGTCTTGGTATCTAATAGACGACACGGCCAAGAAACCCGGAGGAATGGAACTGCTAAGGAAAACGTTCAGAATATGCAAGAGTGATGATTTTGGGCCAGGTTCTTTGGAAGGTTGGCTTCGGGCGGCGTGGGTTAATACAGCCATGACAGATTATCCGACACCATCCAATTTCCTGAATCCCTTGCCAGCATATCCGGTGAAAAAGATATGCGAGGCCATTGACAGCTTAGTCGCGGAAAATAATACATTAGCCAAGTTGTATGCAGCAGCCAATGTCTACTACAACTATTCTGGGACAGCAACGTGTTTCAATGTGGATGACGATTCAGATCCTCACGATCTTAGAGGATGGCAGTGGCAGGCTTGCACGGAGATGATAATGCCCACAAGTGGAAGCAATAAGGAGAGCATATTCCCAGAAATGGAGTGGTCATATGAAGGCAGAGCCACTTTTTGTGACTCTTTCTACAATGTTACGCCAAGACCATACTGGATTACAACTGAGTTTGGTGGCCATGCTATTGAGAGAGTTTTGAAAAGGTTTGCGAGCAACATTATATTCTTTAATGGCTTAAGAGATCCTTGGAGTGGCGGAGGGGTGCTAAAGAGTATATCAAAATCAATAGTTGTTATTGTCACAAAAAAAGGAGCTCATCATGTTGACCTAAGGTACTCAAATACGGAAGATCCTAAGTGGCTTAAAGATGTAAGGAAACAAGAGGGAAAGATCATAGCAAGTTGGATCTCACAATACTATCAAGACCTACAATCCAATAACTAA 1521 0.43 MTPNKLVPLLKDEIPNMRKEHNTGNAYLFPSSAALAELKQRSRSAQNGLYRTKFFTQILDHFNFNPQSYQTFQQRYLINDTYWGGAKKKAPIFVYTGNEGVIEWFAQNTGFMFENAPSFQALLVFIEHRFYGKSIPFGGNKTVAYANASTLGYLTSTQALADYATLIIDLKKNLSANDSPVVVFGGSYGGMLAAWFRMKYPHVAIGALASSAPILHFMDLVSPDIFNSIVTQDYRSESENCYKVLKGSWYLIDDTAKKPGGMELLRKTFRICKSDDFGPGSLEGWLRAAWVNTAMTDYPTPSNFLNPLPAYPVKKICEAIDSLVAENNTLAKLYAAANVYYNYSGTATCFNVDDDSDPHDLRGWQWQACTEMIMPTSGSNKESIFPEMEWSYEGRATFCDSFYNVTPRPYWITTEFGGHAIERVLKRFASNIIFFNGLRDPWSGGGVLKSISKSIVVIVTKKGAHHVDLRYSNTEDPKWLKDVRKQEGKIIASWISQYYQDLQSNN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0824 506 Gene3D alpha/beta hydrolase 54 495 IPR029058 -
Ssu4g0824 506 PANTHER LYSOSOMAL PRO-X CARBOXYPEPTIDASE-LIKE PROTEIN 29 503 - -
Ssu4g0824 506 Pfam Serine carboxypeptidase S28 57 485 IPR008758 GO:0006508|GO:0008236
Ssu4g0824 506 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 29 503 - -
Ssu4g0824 506 Gene3D Serine carboxypeptidase S28, SKS domain 222 389 IPR042269 -
Ssu4g0824 506 SUPERFAMILY alpha/beta-Hydrolases 109 469 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0824 Ssu-Chr4 12934612 12944813 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0824 K01285 - gmx:100781698 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0824 4 12934612 12944813 Ssu4g0824 4 12934612 12944813 ECH