Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0817 ATGCAAGGGTGCTCCTCCTCAAACGCTCCACTCGCCAAGAGGTTAGAAGGCAAGGTAGCACTCATAACCGGTGGAGCTAGTGGCATCGGCGAAGCCACCGCGAAACTTTTCCTTCGCCACGGTGCCAAGGTCGTCATCGCCGACATCCAAGACAACCTCGGACACTCCCTATGCCAAAGCCTCAACCCCGACAACATTTCCTACGTTCACTGCGACGTCACCAACCATAACGACGTCCAAACCGCCGTCAACGCTGCCATCTCGCGACACGGCAAGCTCGACATCCTGTTCAGTAACGCCGGCATCGGTGGCCGTTTGGACCCTTCCATCACGGCCCTTGATCCCGCTGACTTGAAGAGGGTTTTCGAGGTCAACGTCTTCGGTGCTTTTTACGCCGCCAAACACGCGGCTGAGGTGATGGTTCCTAGAAAGAGAGGGAGCATCGTGTTCACCTCTAGCGCTGTTTCGGTGACTCACGCGGGTTCGCCGCACGCATACACGGCGTCGAAGCACGCGGTGGTGGGTCTGATGAAGAACTTGTGCGTGGAATTGGGGAAGCATGGAATCAGAGTTAATTGCGTTTCGCCGTATgcggtggcgactcctctgatGACACGTGAAATGGGGATGGAGAAGGAGATGGTAGAGGAAGTGTTTTCTGAGGCAGGGAACTTGAAGGGAGTGGTTCTAAAGGAAGAGGATGTGGCGGAAGCAGCTTTGTTTTTGGCTAGTGATGAGTCAAAGTACGTGAGTGGGGTGAATCTCGTTGTGGACGGAGGTTACAGTATCAACAATATTGCTTCTGCCGAAGAAGCTTTCAGAAAGTTAGAGGGCAAAGTAGCACTCATAACCGGGGGAGCTAGTGGCATCGGCAAAACCACCGCGAGGCTTTTCCTTCGCCACGGTGCCAAGGTCGTCATCGCCGACATCCAAGACAGCCTCGGACACTCCCTTTGTCAAAACCTCAACTCCGACAACATTTCCTATGTTCACTGCGACGTCACCAACGATAATGAAGTCCAAACCGCCGTCAACGCTGCCGTCTCGCAGCACGGCAAGCTCGACATCCTGTTCAGTAACGCCGGCATCCCTGGCCGAGTGGACCCTTCCATCACGGCCATTGATCCCGCTGACTTGAAGAGAGTTTTCGAGGTCAACGTCTTCGGTGCTTTTTACGCAGCCAAACACGCCGCTAAGGTAATGATTCCTAGAAAGAGAGGGAGCATTGTTTTCACTTCCAGCCTTGCTTCGGTGACTCATGCGGGTGCGGCGCACCCATACACGGCGTCGAAGCACGCGGTGGTGGGTCTGACGAAGAACTTGTGCGTGGAATTGGGGAAGCACGGAATCAGAGTTAACTGCGTTTCGCCCTATGCGGTGGCGACTTCTCTGCTGACAGGTGTAATGGGGATAGAGAAAGAGGAAGCAGAGGAAGTGTTTTCGAAGGCGGCGAACTTCAAGGGAGTGGTTCTAAAGGAAGAGGATGTGGCAGAAGCAACTTTGTTTCTGGCTAGTGATGAGTCCAAGTACGTGAGTGGACTGAATCTGGTTGTGGACGGAGGTTACAGTACCACCAATACTTCTGCCGAAGAAGCTTTCAGAAATTCTTCTGCTAATTAA 1620 0.5284 MQGCSSSNAPLAKRLEGKVALITGGASGIGEATAKLFLRHGAKVVIADIQDNLGHSLCQSLNPDNISYVHCDVTNHNDVQTAVNAAISRHGKLDILFSNAGIGGRLDPSITALDPADLKRVFEVNVFGAFYAAKHAAEVMVPRKRGSIVFTSSAVSVTHAGSPHAYTASKHAVVGLMKNLCVELGKHGIRVNCVSPYAVATPLMTREMGMEKEMVEEVFSEAGNLKGVVLKEEDVAEAALFLASDESKYVSGVNLVVDGGYSINNIASAEEAFRKLEGKVALITGGASGIGKTTARLFLRHGAKVVIADIQDSLGHSLCQNLNSDNISYVHCDVTNDNEVQTAVNAAVSQHGKLDILFSNAGIPGRVDPSITAIDPADLKRVFEVNVFGAFYAAKHAAKVMIPRKRGSIVFTSSLASVTHAGAAHPYTASKHAVVGLTKNLCVELGKHGIRVNCVSPYAVATSLLTGVMGIEKEEAEEVFSKAANFKGVVLKEEDVAEATLFLASDESKYVSGLNLVVDGGYSTTNTSAEEAFRNSSAN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0817 539 Gene3D - 5 267 - -
Ssu4g0817 539 Gene3D - 268 537 - -
Ssu4g0817 539 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 277 524 IPR036291 -
Ssu4g0817 539 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 414 442 IPR020904 GO:0016491
Ssu4g0817 539 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 272 530 - -
Ssu4g0817 539 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 268 - -
Ssu4g0817 539 CDD secoisolariciresinol-DH_like_SDR_c 14 262 IPR045309 GO:0016616
Ssu4g0817 539 PRINTS Glucose/ribitol dehydrogenase family signature 486 506 IPR002347 -
Ssu4g0817 539 PRINTS Glucose/ribitol dehydrogenase family signature 401 417 IPR002347 -
Ssu4g0817 539 PRINTS Glucose/ribitol dehydrogenase family signature 352 363 IPR002347 -
Ssu4g0817 539 PRINTS Glucose/ribitol dehydrogenase family signature 280 297 IPR002347 -
Ssu4g0817 539 PRINTS Glucose/ribitol dehydrogenase family signature 448 465 IPR002347 -
Ssu4g0817 539 PRINTS Glucose/ribitol dehydrogenase family signature 427 446 IPR002347 -
Ssu4g0817 539 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 272 530 - -
Ssu4g0817 539 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 263 IPR036291 -
Ssu4g0817 539 Pfam Enoyl-(Acyl carrier protein) reductase 24 262 - -
Ssu4g0817 539 Pfam Enoyl-(Acyl carrier protein) reductase 285 523 - -
Ssu4g0817 539 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 352 363 IPR002347 -
Ssu4g0817 539 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 407 415 IPR002347 -
Ssu4g0817 539 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 427 446 IPR002347 -
Ssu4g0817 539 CDD secoisolariciresinol-DH_like_SDR_c 275 523 IPR045309 GO:0016616
Ssu4g0817 539 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 9 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0817 Ssu-Chr4 12790793 12815620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0817 271 521 Acyl Lipid Metabolism Gene Families AT3G55290 30.502 7.72e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0817 - - cqi:110732338 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0817 4 12790793 12815620 Ssu4g0817 4 12790793 12815620 ECH