Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0815 ATGGGCAACGCTCAGTCACCTCCCAAAAACGATCCTCGATATGTTTCAGCAaccagAGCTTTTTCTCAAAAGGAACTTGAAGACTTGAGGTCTCTCTTCAATCATCTGGCAGCTCAATCCCAGACCAACGGCAAATACATCTCTCCCTCCGTTTTTCAGTCATATTTTAGACTCCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAAGAGCGCAAGGATCAGAGGTTAACCTTTGAAGACCTCGTTGTTACTAAAGCTACTTATGAGAAAGGAACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTTTGATTGCCATTTTTAACGATATATTATGCATAAACGGTTCTGAGGATAGATCAAGTTCACATCAGGACATTGTCAACATATTTTTGAATGTCGCAAAATTCTCCAAGCATGATGGAGGGGGCACTGAGGAGACTATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCATCTGTGAAGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTCTCAGATTCCTAAACTATTGACCTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATGCTTGGCATATTGGAGGGGCACTTTCTCAGCAAGACCTGGAAGATTGGAAGCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAAATCATGCAGGCCCAACTGTGTTAATTATTAAGGATACAGAGGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGGCATGCTGATTTTTATGGAGACATGAAATGTTACCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCGACTGGAGCAAACAGTAATCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTCGGGGGACGAGTCAATCACTTTGGTTTGTTTCTCTCAGCTAACTTTGATCAAGGACATACATTTTCATGTTCAACGTTTGGCAGTCCATGCCTCTCCAAGACTAACCGTATATTGCCAGAAGTAATAGAATGCTGGGGGGTCACTCAAGATTCGACACAAGACAGGAATGATGCAGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAATATGCTCAATATGGTAGGCCTAGCAAATTCCAGCGAGTAA 1269 0.4121 MGNAQSPPKNDPRYVSATRAFSQKELEDLRSLFNHLAAQSQTNGKYISPSVFQSYFRLHGPLGERMFDLVTQERKDQRLTFEDLVVTKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVLIAIFNDILCINGSEDRSSSHQDIVNIFLNVAKFSKHDGGGTEETMSFEDFRSWCTHLPSVKKLLGSLLLPPDSGRPGSQIPKLLTSKAIDSNIILLRKEYAWHIGGALSQQDLEDWKLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDTEGYIYGGYASQPWERHADFYGDMKCYLFQLNPVASIFRPTGANSNLQWCAINFSSEDIPNGIGFGGRVNHFGLFLSANFDQGHTFSCSTFGSPCLSKTNRILPEVIECWGVTQDSTQDRNDAVKGTILERFKEDRNMLNMVGLANSSE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0815 422 ProSiteProfiles TLDc domain profile. 218 386 IPR006571 -
Ssu4g0815 422 Gene3D - 3 190 - -
Ssu4g0815 422 SMART 109ultra 219 386 IPR006571 -
Ssu4g0815 422 SUPERFAMILY EF-hand 6 191 IPR011992 -
Ssu4g0815 422 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Ssu4g0815 422 Pfam TLD 242 385 IPR006571 -
Ssu4g0815 422 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 414 - -
Ssu4g0815 422 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Ssu4g0815 422 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0815 103 421 EF-hand Containing Proteins AT5G06260 61.180 2.15e-151 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0815 - - gmx:100804508 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0815 4 12724364 12729732 Ssu4g0815 4 12724364 12729732 ECH