Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0813 ATGACGCTTGGCTCTGCAGGATCCAGTGTGGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAACttgaaaagggagaaaaaggaATCGGTGATGGCACAGTTAGCTATGGAATGGATGACGGTGATGATATTTACATGCGCTCTTGGACTGGCACCATTCTTGGCCCccataatACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCGGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACGAAGATTTACCATGGAAGATATACTGACCCAGCTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTGTCCAGCCTCCAGAAGGTACTTACTATTAG 441 0.4172 MTLGSAGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTILGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQLKKEMAASHNRKLVQPPEGTYY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0813 146 Pfam Ubiquitin-conjugating enzyme 43 132 IPR000608 -
Ssu4g0813 146 PANTHER - 9 140 - -
Ssu4g0813 146 SMART ubc_7 16 146 - -
Ssu4g0813 146 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
Ssu4g0813 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
Ssu4g0813 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Ssu4g0813 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0813 Ssu-Chr4 12662499 12666790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0813 K10704 - gmx:100789495 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0813 4 12662499 12666790 Ssu4g0813 4 12662499 12666790 ECH
Ssu4g0813 4 12662499 12666790 Ssu7g2618 7 51661480 51665641 PCT