Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0812 ATGCAAAACCCTAAAGCCACGCCCCAATCCCATGGATCCATCCTCACACGATTAGTATGGTCCTCCAATCTGGAATCGGAGTTCGAGTTAATCCGATCCGTGATCGACTCGTTCCCTCTCATCTCCATGGACACCGAGTTCCCCGGCGTCGTCGTGCGTCCTGACGCCGGCGACCCCTCCTTCCGGCACCGGCAACCGCCGCGCACTACGCCGTGCTCAAAGCCAACGGTTTTTGATGTGAAGCACTTGATGAGGTTTTGTTCGAATTTGCATGGTGGGTTGGACCGGGTTTGCCAGTCGCTGAAGGTGGAACGGGTTATAGGGAAAAGTCATCAGGCTGGTTCGGATAGCTTGCTCACTCTGCACGCTTTTCAGAACATCAGAGAGCTTTACTTTGGCAAAGCTGATGAACTTGTTCAGTACGCTGGTGTCTTGTATGGCTTAGAGCTTACATATTCTGGCTTATCAATGTCATTAGGAATTATTAATTCTTCCGGTTCTATTGCACTTGCGTATGATAGTAATGTAGCGGGAAGAGGCAACACATTTGTTGACTGA 558 0.5018 MQNPKATPQSHGSILTRLVWSSNLESEFELIRSVIDSFPLISMDTEFPGVVVRPDAGDPSFRHRQPPRTTPCSKPTVFDVKHLMRFCSNLHGGLDRVCQSLKVERVIGKSHQAGSDSLLTLHAFQNIRELYFGKADELVQYAGVLYGLELTYSGLSMSLGIINSSGSIALAYDSNVAGRGNTFVD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0812 185 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 76 150 - -
Ssu4g0812 185 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 4 67 - -
Ssu4g0812 185 SUPERFAMILY Ribonuclease H-like 19 148 IPR012337 -
Ssu4g0812 185 Gene3D - 72 148 IPR036397 GO:0003676
Ssu4g0812 185 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 76 150 IPR039637 GO:0004535|GO:0030014
Ssu4g0812 185 Gene3D - 3 71 IPR036397 GO:0003676
Ssu4g0812 185 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4 67 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0812 Ssu-Chr4 12649168 12650185 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0812 K12581 - gmx:100805583 143.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0812 4 12649168 12650185 Ssu4g0812 4 12649168 12650185 ECH