Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0792 ATGGCGACGCACCCGCAACCCTCAACCTCGTCGAACGCGTTTTCGTTCCTGTCGAAGGGTTGGCGCGAGGTTCGGGACTCGGCGGACGCGGATCTCCGTTTGATGCGGGCCCGAGCGAACTCGTTCAAGGACCTAGCGACGTCGTTTGACCGCGAGCTCGAGAACTTCTTCAATTCGGCGGCGCCGCCGTTCTCGGTGCCGGCCATGCGGTCTCCGCCGCCGAGGGAGATCGAGTTCGTGAAGAGTCTGCGGCCGAAGCTGTCGGAGATTCGGCGCGCGTACTCGTCCCCCGATTTCAGCAAGAAGGTTCTGGAGAAGTGGCGGCCGAGGACGCGGATTCGAATCGACCTTTCGGCGATAAGGAACGCGATCGTGTCGGAGGAGGAGGGGATTGTGGGTTTCGAGAAGGGAAAGAGGTTGAGTTTCTGGGAGGAGTGGAAGGGCGAAGGCGAGGGTGAATCTAGGAGGGATTGGGAACCAATTCGAGCCTTGAAGACGAGGCTCAAAGAGTTTGAGAAGAGGGGTTCCTCTTTTGAGGCTTTCAAGAGCAGTGAATTCATCGAGAAAGTCAAGTCTAGCTTGAAATTAATATGCAAGGAACCTCAGGAGTCAAAGGAAGTGCCACCATTGGATGTACCTGAACTTCTGGCCTACTTTGTAAAACAGTCTGGGCCATTTTTGGATCAGCTTGGAGTCAAAAGAGACATATGTGACAAGATAGTAGAAAGCTTGTATAGCAAACGCAAAAACCATCTTCTACTGCACTCCCTCTCTGGTGAAGAATCTTCTGTTCTTGGGAATGGAAACATAAATGATGAATTGGATATGCGAATAGCAAGTGTCCTTCAGAGTACAGGGCACCGGTATGACGGTGGATTCTGGACAGACCATGCAAAGCATGATCCATCAGACAATGAAAGACATGTTGCAATAGTCACAACTGCTAGTCTTCCTTGGATGACTGGAACAGCTGTAAACCCACTATTTCGAGCTGCATATTTATCACAATCTGCAAAGCAGAAAGTCACTCTACTGGTTCCATGGCTTTGTAAATCAGATCAAGAACTAGTTTATCCCAGCAATGTCACTTTTTCTTCACCAGAAGAACAGGAAGTTTATATACGTAACTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGacttcaaaatttctttttatcctgGGAAGTTTTCGAAAGCAAGACGGAGTATAATACCTGCTGGAGATACTTCTCAATTTATACCATCCAGGGACGCTGACATTGCTATCCTGGAAGAACCAGAGCATTTGAATTGGTATCATCATGGTAAGCGTTGGACAGACAAATTCAACCATGTTGTTGGTATTGTCCACACAAATTACTTAGAATACATCAAGAGGGAGAAAAATGGGGCACTCCAGGCATTCCTTGTGAAACACATAAACAATTTGGTTACAAGAGCATACTGCCACAAGGTTCTTCGTCTCTCGGCTGCTACTCAGGATTTACCCAAGTCAGTAATTTGCAATGTTCATGGTGTGAATCCCAAGTTCttaaaaattggagaaaagATTGCTGCAGAGAGGGAGCTAGGGCAGAAAGCCTTTACAAAAGGTGCATATTTCTTGGGAAAGATGGTATGGGCAAAGGGATATAAGGAGTTGATAGATTTATTAGCAAAGCATAAGGCTGATCTTGATGGCTTCAAGTTGGATGTATTTGGAAACGGAGAGGATGCTAATGAAGTTCAGAGTGCAGCTAGAAGGCTGGATTTGAATCTCAACTTTCAGAAAGGAAGAGATCATGCAGACGATTCTCTTCACGGGTACAAAGTCTTTATAAATCCTAGCATTAGTGATGTGCTATGCACAGCTACAGCTGAGGCACTTGCCATGGGCAAATTTGTAGTTTGTGCTGATCATCCATCAAATGAGTTCTTCAGGTCATTTCCCAACTGTCTGACTTACAAGACATCCGAAGACTTTGTGGCAAAAGTAAAAGAAGCATTAGAAAATGAGCCTTATCCTCTAACACCTGAGCAAAGATATAAACTTTCTTGGGAGGCTGCTACTCAAAGATTTATGGAATATTCCGAGCTTGACAGAATCCTTAACAAGGAAAATAATGGTGAAAAGTCAGACAATGGAAAGCTCATTGCTAAGTCAGTGTCAATGCCTAATCTGACAGAAGTAGTAGATGGAGGTTTAGCATTTGCTCACTATTGTTTCACTGGAAATGAATTCCTGAGATTATGTACAGGAGCAATACCCGGGACACGTGACTACGATAAGCAGCATTGTAAAGACCTTCATCTCCTGCCCCCACAGGTAGAAAATCCTATCTATGGCTGGTGA 2334 0.4507 MATHPQPSTSSNAFSFLSKGWREVRDSADADLRLMRARANSFKDLATSFDRELENFFNSAAPPFSVPAMRSPPPREIEFVKSLRPKLSEIRRAYSSPDFSKKVLEKWRPRTRIRIDLSAIRNAIVSEEEGIVGFEKGKRLSFWEEWKGEGEGESRRDWEPIRALKTRLKEFEKRGSSFEAFKSSEFIEKVKSSLKLICKEPQESKEVPPLDVPELLAYFVKQSGPFLDQLGVKRDICDKIVESLYSKRKNHLLLHSLSGEESSVLGNGNINDELDMRIASVLQSTGHRYDGGFWTDHAKHDPSDNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSAKQKVTLLVPWLCKSDQELVYPSNVTFSSPEEQEVYIRNWLEERIGFKADFKISFYPGKFSKARRSIIPAGDTSQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVKHINNLVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKIAAERELGQKAFTKGAYFLGKMVWAKGYKELIDLLAKHKADLDGFKLDVFGNGEDANEVQSAARRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALENEPYPLTPEQRYKLSWEAATQRFMEYSELDRILNKENNGEKSDNGKLIAKSVSMPNLTEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGW 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0792 777 CDD Glycosyltransferase_GTB-type 500 640 - -
Ssu4g0792 777 Gene3D Glycogen Phosphorylase B; 531 685 - -
Ssu4g0792 777 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC 6 777 - -
Ssu4g0792 777 Pfam Glycosyl transferases group 1 534 669 IPR001296 GO:0016757
Ssu4g0792 777 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC 6 777 IPR044525 GO:0046481
Ssu4g0792 777 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 309 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0792 Ssu-Chr4 12285110 12291526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0792 12 601 Glycosyltransferase AT3G11670 69.016 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0792 K09480 - gmx:100796354 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0792 4 12285110 12291526 Ssu4g0792 4 12285110 12291526 ECH