Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0784 ATGGATCCGGCGATGACGCCGCTGGGGCAAATGCTATTGGAGGAGATCACTCCCGTGGTGATGGTCCTTTCGACTCCTTCCGTCGAAGAAGCTTGCCTCAAGAACGGCCTCTCCTTCCTCCAGACGCTAACGCCATTCTGCTCCTTCAACAACATCGACGTGCCTGTTAGGACCGCCAGTGACCAGCCCTATCGTCTTCACAAGTTCAAATTGCGCTTGTTCTATGCTTCCGATGTGAGGAAGCCCGATTTGAAGGTAGCTAAAGAGCAATTGAAGCAAGTTATCACAGAGGCAGGGGAGAAAATGTTTTCTGAGACGTGTTCAGATGTGCCAGAAATTAATCATGAACTTGAGAGTTCTGAATACCAAAATACACCATCCTGGTTTCAGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCCGACCATGAAGCTTTTGACCATCCTGTGACATGTCTTCTAGCTGTTTCTTCAAAGGATGAACAGCCTATTAACAGATTTGTTGATCTTTTTAATACCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAAATTTCAAAGCATTACTTGTTAGTGCATAATAATCAAGATGGCCCTGCAGACAGAGCAAGTAAAATATTGACAGAAATGAGGAGTACATTTGGTTCAAGCGACTGTTCGTTGCTTTGCATTAATTCTTCCCTGGATGCTCCAATCAAACATCAAGATAATCCTTGGGCTTCAAATATAACTGATGCCTCACCTACTCCTAGTCAAGATCTTGGTTGCTTTCTCAACATTGATGATATCAATGAGATCAAAGATCTAATGCAAGATTTATCATCTAAGCACATCATTCCAAATATGGAGCAAAAAATTCGTGTACTCAATCAACAGgtTTCTGCAACACGAAAAGGgtttaaaaaccaaataaaaaatttatggtggagaaaagggaaagaagatGGTGCAGATTCTCTCAATGGTCCTACGTATAACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCACTGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGtgcaggaAATGATGGGACTTACATACTTCATGTTGGATCAATCAAGAAAGGAAGCTGAGTATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATCGTTGGGTCAGCTAAATGCAACACGATGTGGTCTGTGGTGGATGGAAATGTTAAAGGCACGTGATCAATATAAGGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTACTTGTTGTCTAAACCCTCCATGTTACGCAAATATGGATTTCATCTAGTGCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACATGCAATTCGAACATACAGAAGTGCTCTTTCTGTTTTTAGAGGAACGACTTGGAGTTATATCAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTGGCTGTCAAGCATATGACGGAAATCTTGGCCTGTAGTCACCAGTCCAAGACAACACAGGAATTATTCCTGGGTGACTTTCTTCAAATTGTGGAGAAAACTGGACGGACATTTGAGGTAACAAAACTTCAATTGCCTGTAATCAACATCTCTTCACTCAAGGTCATCTTCGAAGATAACCGAACTTTTGGATCACCTTCAGCTGCTAATACTAGAGAAGGCTTGTGGCATTCTTTGGAGGAAGAAATGCTACCATCATTCTCTGCTGCCAAGACTAATTGGTTGGAGCTGCAATCAAAGCTTATCTCAAAGAAGCACAGTCAATCAAATGTTTGTGTTGCAGGAGAAGCTGTGAAGGTGAATATTGAATTCAAAAATCCTCTGCAAATCTCAATTCCCATATCTGGTGTTACACTCATATGCAAGTATTCTGCTAGTACTGATGAAGTTAGATCAGATGAAAATGAGTCAAGTATGGAGAATGATAACAAGGTTGACCACTTCAGGCATATGAGCTCTGACAATTCCTCATTTATGGTGTCTGAGGTTGATTTCTTATTAGGAGGTGGTGAAACAACCATGATTCAACTATCAGTTACTCCCAGGGCAGAGGGTACTCTTGAAATTCTTGGTGTTAGGTGGAAACTGTCGGGTACAATAGTGGGCTTTCACAACTTTGAGTTGGGCTACCCAAAGAGGAATATtctaaaagaaagaaggaaaacaaaGGACCTgccaaatgaaaaatttaaatttatggtgATTAAGAGCATACCCAAGCTTCAGGGTTCCATTCACCCTTTACCTGGAAAGGCATATGCTGGAGATTTACGGCAACTTGTTTTGGAATTGAGGAATTCATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGATTCCTGGTAATTGGGAAGCAGGAAAATATGGAGTCAGAGTTTCCTGCGTGCTTAAGAAAGAAGACATATCCAGTACAAAGTGACGTGCATGCTAATCCTAATATCATGTCTGACACAGTCTTTTTGTTTCCAGAGGGCACATCAGTTCAAGGTGAAACACCCTTCTTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGATATATCGCTTTACATGAGCATATATTATGAGATGGGAGATGTATCAAGTGTCATCAAATATCGTACTCTTCGCTTGCATTATTATGTGCAGGTATTACCATCATTGGATGTGTCATTTCAAATCAGTCCTTCTCGATTAAGATTACAAGAATTTCTTGTTCGATTGGATGTTATTAACAAGACTAGCTCAGAAAGTTTCCAAGTTTATCAGTTGTCGTCAGTTGGTCACTGTTGGGAAATCTCATTGCTTCAAGTTCCTGATACTATTTGTCTTTCACAATCATTGATGGCTGGTCAAGCAATATCGTGTTTCTTTACACTAAAGAAATCAAGCAGGTTTTCGACATTGGAGGACAACATATCTACATTGCCTGTCAGAAGTGATGTAAGATTGGTACCCCAAAGCGAGGATTTAGTTTATGATATAAACAGTGCACCTTTGGTCAATTTCCACCATTATGAAAGATTGCAGCAGGAAGTTTCATATGAGGGTGACTTAAATACTGTTGATTTTGTATTAATCTCTCGGCCATTCAAGAATAACAACGATCCTGGTTTTTTCAATCCTCCTCATGTTATGTCTCATCATGCGTGTCACTTCAGTACTGCTAGCACGGGCCCTATTTCATGGCTAGTGGATGGACCTCAAACTTTGCATCATGACTTCTCCGCATCATTCTGTGAAATAAGTCTGAAGATGCATTTTTACAATTCATCTGGTGCCACTGCTTTTGTACGCATCGACACCTTAGATTCTGCTGGTAATGGTGGACCTATGAACAGTGTAAATCCGGTTCAATCAGTAACTCCTGATAACCAAGCAGGGTGGCATGATATCACACCAGTGAATGAACTCAAAGTCACATCTAATGTTCTTGAAACCCAACCAGGAAAGGCACTATCATTAGAAGGTGTCTCCTCATATATTTGGTCTGGATCAAGCTCGACCAATCTTCACATTGAGGCTATGTCCTCCGCAGAAATTCCTCTTCAGATCTGTGTATTCTCTCCAGGGACATACGACctgtcaaattattttttgaattggaAACTTCCATCCGATGGTAAGGGAGACAGTGATGAAACGAGGCAGCAGTCAGGCAAGTGCCACGGCTATAAATACTATCTTACCGTGCTCCAGTCCACTTGA 3864 0.3967 MDPAMTPLGQMLLEEITPVVMVLSTPSVEEACLKNGLSFLQTLTPFCSFNNIDVPVRTASDQPYRLHKFKLRLFYASDVRKPDLKVAKEQLKQVITEAGEKMFSETCSDVPEINHELESSEYQNTPSWFQFLNKELVRVASFSDHEAFDHPVTCLLAVSSKDEQPINRFVDLFNTNKLPSLLNDGAMDPKISKHYLLVHNNQDGPADRASKILTEMRSTFGSSDCSLLCINSSLDAPIKHQDNPWASNITDASPTPSQDLGCFLNIDDINEIKDLMQDLSSKHIIPNMEQKIRVLNQQVSATRKGFKNQIKNLWWRKGKEDGADSLNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLKLGSLGQLNATRCGLWWMEMLKARDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALSVFRGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMTEILACSHQSKTTQELFLGDFLQIVEKTGRTFEVTKLQLPVINISSLKVIFEDNRTFGSPSAANTREGLWHSLEEEMLPSFSAAKTNWLELQSKLISKKHSQSNVCVAGEAVKVNIEFKNPLQISIPISGVTLICKYSASTDEVRSDENESSMENDNKVDHFRHMSSDNSSFMVSEVDFLLGGGETTMIQLSVTPRAEGTLEILGVRWKLSGTIVGFHNFELGYPKRNILKERRKTKDLPNEKFKFMVIKSIPKLQGSIHPLPGKAYAGDLRQLVLELRNSSEFPVKNLKMKISHPRFLVIGKQENMESEFPACLRKKTYPVQSDVHANPNIMSDTVFLFPEGTSVQGETPFLWPLWFRAAVPGDISLYMSIYYEMGDVSSVIKYRTLRLHYYVQVLPSLDVSFQISPSRLRLQEFLVRLDVINKTSSESFQVYQLSSVGHCWEISLLQVPDTICLSQSLMAGQAISCFFTLKKSSRFSTLEDNISTLPVRSDVRLVPQSEDLVYDINSAPLVNFHHYERLQQEVSYEGDLNTVDFVLISRPFKNNNDPGFFNPPHVMSHHACHFSTASTGPISWLVDGPQTLHHDFSASFCEISLKMHFYNSSGATAFVRIDTLDSAGNGGPMNSVNPVQSVTPDNQAGWHDITPVNELKVTSNVLETQPGKALSLEGVSSYIWSGSSSTNLHIEAMSSAEIPLQICVFSPGTYDLSNYFLNWKLPSDGKGDSDETRQQSGKCHGYKYYLTVLQST 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0784 1287 PANTHER TRANSPORT PROTEIN TRAPP 7 1286 IPR024420 -
Ssu4g0784 1287 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 171 520 IPR024420 -
Ssu4g0784 1287 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 639 831 IPR013935 -
Ssu4g0784 1287 Gene3D Tetratricopeptide repeat domain 330 555 IPR011990 GO:0005515
Ssu4g0784 1287 SUPERFAMILY TPR-like 431 552 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0784 K20305 - gmx:100813062 2394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0784 4 12056271 12080213 Ssu4g0784 4 12056271 12080213 ECH