Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0770 ATGACCCGTTTCTCCGAGAAGCTCCGTTTGCGTTCCTTGTTCCCCAAACCGACCCGCTTTCTCGCTCTTCTATCTCTCTCCACTCTCTATCACCTCTGCAAGTCCCTCGCCCGCTTCCTGCTCTCCCAAACCCTACCCTTCCTCGCCATGGACAACCTCTTCTCCGACGACTTCGATTCCGCCTCCTGCCGTCCCAACCGCCGCTTCCTCCAAGACGACGACCGCGATTTCGGCCACGAGCGGGTCTACCTGCTCCCTCACAGGTGGTGGGTGGAAGCGGAAGGTGAAGGCGATCGTGGAGAGGGTGTGCTTTATACGGTGTCGTGCAATTCCGATTCGGACTTTGAGATTTTGCTCCATCTGAGGAAGGAAGAGGAGCGTCAGAAGATTGGGGTTTCTGATCGTCAGTATGCCTTGGTTCCTGAGGGGATTTGGTTGCGTGCTCTCAAACGgtataatgattttaataatgCAGTGAAAGATTTTGGAAGCCTCTCCTATCCAGAGGACTGTTTACCAGATTTGTTCCCCTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTCTCTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCCTGTGACATTTTCAATTCTGCATATAATCCCGTGCAAATTTGGGACTTTTCAGGGCAGACAACCCAGTTCTTCTTGAATGACAAAGCTAGGTTGCCAAACGATTCTCCTGGTCAACCTGGAAAAGAGGTTGTTCTGGAATTACAAGTTCATGGACTTCCAGATTCTATGAGGGGTAATGAGGGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCTCATAGTGGCTCTATTATAATGAATGGAAGCACTGACAATGTGATTCCATATGTAGCAGTGACCAACTATTTTCGAGGCAGTAGCTATAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACGTGTTTTATGAATACTGCCATTCAGTGTTTGGCTCACACCACAAAGCTTGTTGATTTTTTCCTTGGAGATTACCGTAAAgagataaattatgaaaatccgTTGGGAATGAATgGAGAACTTGCTCTAGCTTTTGGAGACTTACTTAGAAAGCTGTGGGTTCCTGGAGCAGTGCCCATTACCCCAAGAACATTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGCTGGATGGATTGCATGAAGATCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCACATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAATAGTTGATCTGTGCCAAGGTCAGTTTCGGTCAACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTACGATACGGACCATGACTTTGACTGTCATAAGCACTGATGGGATTACATTGCCTTCTATAATTTCGGTAATGGTGCCTGAATGTGGAACACTTAAGGATCTTATTGGGGCCTTAAGTGCTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATACAAGGAGCCATCTGATTTATTAGTTGATATTAGAGATCAAGACAAACTTGTCGCTTACCGAATTGAGAAGTATAATGAAGCTACTCCCTTGGTTGTTTTTGTGCATGAACGTTTGGTGGAAAATTTTGGGAAGGAGAGGTTTGCAAACAGGTTGTTTGGTATTCCCCTTGTAACAAGGTTGTCCAGTATTTCTTGTGGATATGATGTTCAAAGGGAGTTTCTGAAGTTAATCAAGCCATTTCTGATTCGCACTGAAGATATATTAGATGAGTATGATAAGGATGACGGTGTTAATAAACGACTAAGTGAAGATGATGAATTGGGTGATACTACTAACTCTGCAGCAATAGGAAGTGATGCAGACTCAAACAGTGGAACAGAGGATGACATTCATTTGTCGACTGACTTTGAATTCTACTACAGACAAGAAAATGAGAATGTCAAGATAATATTGAACAAACCATTACCAGTCACAATGTTGTTTGGAAAGCCGGAGGTATTTGTCTTGTGGTCAGATAAGATGCTTAAATTGTATGATACATACCTGCTTGACTCATTGCCTGAGGTTTTCAAGCCCCGGTCATTCACCAAGAGAACGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCCGCCTGCAAAAAGCCTCAGCAAGCAACTAAAAAACTGGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGATTCTTCAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATTTGGACTTATCAACATATGTAGCCCACGGGAATAGTCAGTCTTCCAACCGCTATGTGTTGTATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTtATGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTGTTAGTGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2748 0.4247 MTRFSEKLRLRSLFPKPTRFLALLSLSTLYHLCKSLARFLLSQTLPFLAMDNLFSDDFDSASCRPNRRFLQDDDRDFGHERVYLLPHRWWVEAEGEGDRGEGVLYTVSCNSDSDFEILLHLRKEEERQKIGVSDRQYALVPEGIWLRALKRYNDFNNAVKDFGSLSYPEDCLPDLFPLQVKIFVSWETSSLVAKISQKENVADFYEKACDIFNSAYNPVQIWDFSGQTTQFFLNDKARLPNDSPGQPGKEVVLELQVHGLPDSMRGNEGNEMILDRSQMECSHSGSIIMNGSTDNVIPYVAVTNYFRGSSYRAIRSLGLTGLQNLGNTCFMNTAIQCLAHTTKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGAVPITPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDAHGRPDEEVAEEYWRNHLARNDSIIVDLCQGQFRSTLVCPMCKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSIISVMVPECGTLKDLIGALSASCSLRDDETLLVAEIYRNKIFRVYKEPSDLLVDIRDQDKLVAYRIEKYNEATPLVVFVHERLVENFGKERFANRLFGIPLVTRLSSISCGYDVQREFLKLIKPFLIRTEDILDEYDKDDGVNKRLSEDDELGDTTNSAAIGSDADSNSGTEDDIHLSTDFEFYYRQENENVKIILNKPLPVTMLFGKPEVFVLWSDKMLKLYDTYLLDSLPEVFKPRSFTKRTQESVSIYKCLEAFLKEEPLGPEDMWYCPACKKPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLETFVDFPINDLDLSTYVAHGNSQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVSEDMIKTPAAYVLFYRKV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0770 915 CDD Peptidase_C19R 743 913 - -
Ssu4g0770 915 Gene3D Cysteine proteinases 308 550 - -
Ssu4g0770 915 SUPERFAMILY Cysteine proteinases 318 914 IPR038765 -
Ssu4g0770 915 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 915 IPR028889 -
Ssu4g0770 915 MobiDBLite consensus disorder prediction 673 688 - -
Ssu4g0770 915 Pfam Ubiquitin carboxyl-terminal hydrolase 320 912 IPR001394 GO:0004843|GO:0016579
Ssu4g0770 915 MobiDBLite consensus disorder prediction 664 692 - -
Ssu4g0770 915 Gene3D Cysteine proteinases 608 915 - -
Ssu4g0770 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 45 915 - -
Ssu4g0770 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 45 915 - -
Ssu4g0770 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 858 875 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0770 Ssu-Chr4 11886873 11894089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0770 769 915 Miscellaneous Gene Families AT4G31670 34.667 2.47e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0770 - K21343 gmx:100791802 1576.22