Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0768 ATGGCAAAACAAGGAAACATTGTGCAGTATAGGGAGAGGTTGGACAAGACCCTGGCCTTGCCTGATCTGACAAACGACCAGATACTCAAAACGCTCGTCAAAAGTCAACTCCAATGTTCTTCAAAAGTGGAAATTGAAGGAAATAATGAGGAACTAGTAGAAACCAAGACTACAGCGCTATGTAACTTTCTTGACATGTTGAGAAGTGCATCTGTAGACAGTAGTGGAGGATCTAGTACATCACACTCTGATTGGAAATTGAAACAGGATGATGAAGAGTTCCGTGTTATGTATCGTGAAGGACCAGAGGGAACTCCCTTTCACACATTGCTAGTTGAAGGCTATGTAGATGGGCCACTCGATCTTTCTTTGTGCCTTTCATGGGAGACGTCCCTCTACAAGAAATGgTGGCCTCAGTTTTCTATTCCCAGTTTCAAAGTTCTAGTAGCTGACCGTTTGCAGAGGGTCCAGATTGGGGAGCAAATATCACTAGTTAGGATGAAGGTTCCATGGCCGCTGTCTCCGAGGGAGGCTATAGTGCATTGTTATCTGTTTGAGTACTTTCAAGATGATTTAGTAGTTGTTCTTTTGAATACGGTCCCCGAGTCAAAGAGCATTCATGATTTCAACAAGGATAATGCAATTCCTGAAGCAAAGGATGTCGTGAGAATGGATTTGGTGGGAGGCTATGTTATGCAAAAGGTGACATCGGAAAGAAGTTATTTTCGGATAATAGCAAATTTGGATATAAAGCTGGATCTCGTACCTCCAACCCTCATCAATTTCATTTCAAGGCAGCTCATTGGCAGTGGTTTCAGACTTTATCAGAAGGCTGTGGCTTCTATGATGGGCCATGATAAAGATAAAGACTTCAGCAAAGCCTTGGAGGACTCATTGTATGTTAGAATACGCGAAGCTCTATACAACAATAGTGGATCAAAGATTATGGATGGGGAAGATCTTAAGCAAGATGCATGCATTGTTTCTTTTGAAGAACTTATTCAAAGTGAGGATGGGGCAAAAGATGTATCCTGTGAGGATAGCAGCAACCAATGTGCACATAATTACAATGGGGAGACTTTAGATGCAGGTAGTGAAGAGATGGTAGAAGCAGATTGTAAAGAGATTGTACAAATTGAGGAGGATGTCAACAAGGTACTTGATGTTCCAATTGAGGAAGGTGATTCATGGAGTGTAATGAAAGGCAAGGGGAATGGTGAGATTGTAGATGCAGATAATGAAGAGATTGTAGAAACAGATTGTGAAGAGATTGTTCAGATTGAGAAGGATGTCGACAAAGTGCATGACATTCCAGTTGAGGAAGATGATACAAGGAGTATGCTGAAGGAcaagatgaatgtatatataCGCTCTGATGTGAGAAAGGCTCTAGAAACAATAGAGAGGGTTATTTCAATGGTTCGGGAATGTGGATTTCATTCTCCCAGGTCCACTTCAAACTCTGCTGATGAAGAGTCCCACTGCATGGAAAAGGCTGGCACAGTTGATTCAAATTCTGCAAAACTCATTCAAGTTTGTTTGAAAAATGAGGTTAGTGTCAAAGTATCAAGCAACAATATACCGgaggaaaatttaaaagaatctgGGACGATCCAAAGCTTCaggttatttattttactctttctctggttatttaaaggaataaagattttttaa 1677 0.3936 MAKQGNIVQYRERLDKTLALPDLTNDQILKTLVKSQLQCSSKVEIEGNNEELVETKTTALCNFLDMLRSASVDSSGGSSTSHSDWKLKQDDEEFRVMYREGPEGTPFHTLLVEGYVDGPLDLSLCLSWETSLYKKWWPQFSIPSFKVLVADRLQRVQIGEQISLVRMKVPWPLSPREAIVHCYLFEYFQDDLVVVLLNTVPESKSIHDFNKDNAIPEAKDVVRMDLVGGYVMQKVTSERSYFRIIANLDIKLDLVPPTLINFISRQLIGSGFRLYQKAVASMMGHDKDKDFSKALEDSLYVRIREALYNNSGSKIMDGEDLKQDACIVSFEELIQSEDGAKDVSCEDSSNQCAHNYNGETLDAGSEEMVEADCKEIVQIEEDVNKVLDVPIEEGDSWSVMKGKGNGEIVDADNEEIVETDCEEIVQIEKDVDKVHDIPVEEDDTRSMLKDKMNVYIRSDVRKALETIERVISMVRECGFHSPRSTSNSADEESHCMEKAGTVDSNSAKLIQVCLKNEVSVKVSSNNIPEENLKESGTIQSFRLFILLFLWLFKGIKIF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0768 558 PANTHER START-2 DOMAIN PROTEIN 1 542 - -
Ssu4g0768 558 Gene3D - 82 286 IPR023393 -
Ssu4g0768 558 PANTHER POLYKETIDE CYCLASE/DEHYDRASE/LIPID TRANSPORT SUPERFAMILY PROTEIN 1 542 - -
Ssu4g0768 558 SUPERFAMILY Bet v1-like 80 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0768 Ssu-Chr4 11867421 11872138 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0768 - - gmx:100813944 845.499