Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0763 ATGGATTCTTCTTCCATCTATGGCGTCTCCTACACCCTCTTCCTCAccctcttctttctctccttcCATTCCCACTCCGCATTGCCTCACAACTCCTCCACCTCCGGTCAGATTAACTCCAACTCCATCCTCGTCGCGCTTCTCGATTCCCACTACACCGAGCTCGCCGAACTCGTGGAAAAAGCGCTTCTCCTCCAGAAACTCGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCGCCGCGAAACCAAGCCCTAGAACGCGACCTCGACCCCGAGTTCAAGCGCTTCCTTCTCGAGCCCCGCAATCTCAAGTCCCTCCAGACGCTCTTGATGTCCCACATTCTCCCCACGCGAATCGCCTCCCGCCACTGGCCCGCCGCCGACCTCCGCCACCGCACCCTCTCTGACCACCACCTGCATTTGACCACCCAACCCTCCAGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCGTCCGCCCCGACGGCGTCATCCACGGCATCGAGCGCCTCATCGTCCCCCGATCCGTGCAGGAGGACTTCAACCGCCGCCGAAACCTCGCCGCCATCTCCGCCGTCCTACCGGAGGGCGCGCCGGAGGTCGATCCCCGCACGCACCGCCTCAAGAAGCCCGCGCCCGTCCCCGCCGGCGCCCCGCCGGTGCTCCCGATCTACGACGCCATGGCGCCGGGACCGTCCCTCGCGCCGGCGCCGGCGCCGGGACCGGGAGGACCAAGGCACCACTTCAACGGCGAGCGCCAGGTGAAGGACTTCATCCACACGCTCTTGCATTACGGAGGATACAACGAAATGGCAGATATTCTTGTGAACCTTACTTCTCTGGCCACCGAAATGGGAAGGTTGGTTTCCGAAGGTTATGTTCTCACCGTTTTGGCTCCAAACGACGAAGCCATGGCGAAGCTTACGACGGATCAGTTGAGCGAACCGGGCGCACCGGAGCAGATTATGTACTATCACATTGTTCCTGAGTATCAGACTGAGGAGAGTATGTATAATGCGGTTAGGAGGTTCGGTAAGGTCCGCTACGATACCCTGCGGTTGCCGCATAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCCTACCTGTTTGATCCTGATATTTACACCGATGGGAGGATCTCCGTTCAGGGGATTGACGGCGTTCTTTTCCCTCCTGAGGAAGAGGAAGAACGCACTCGTCGCACCACTCCACTTGTCAAGGTTGCCGCTAAACCAAGGAGAGGGAAGTTGCTGGAACTCGCCTGTAGCATGCTTGGAGCTTTTGGACAAGTCTGCCAATGA 1347 0.5902 MDSSSIYGVSYTLFLTLFFLSFHSHSALPHNSSTSGQINSNSILVALLDSHYTELAELVEKALLLQKLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLKSLQTLLMSHILPTRIASRHWPAADLRHRTLSDHHLHLTTQPSSQRTVDSAEILRADDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIVPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLFPPEEEEERTRRTTPLVKVAAKPRRGKLLELACSMLGAFGQVCQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0763 448 Gene3D FAS1 domain 280 407 IPR036378 -
Ssu4g0763 448 ProSiteProfiles FAS1/BIgH3 domain profile. 39 178 IPR000782 -
Ssu4g0763 448 Gene3D FAS1 domain 43 180 IPR036378 -
Ssu4g0763 448 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 446 IPR044654 -
Ssu4g0763 448 SUPERFAMILY FAS1 domain 39 181 IPR036378 -
Ssu4g0763 448 Pfam Fasciclin domain 296 406 IPR000782 -
Ssu4g0763 448 Pfam Fasciclin domain 51 180 IPR000782 -
Ssu4g0763 448 SUPERFAMILY FAS1 domain 240 408 IPR036378 -
Ssu4g0763 448 SMART fasc_3 78 181 IPR000782 -
Ssu4g0763 448 SMART fasc_3 302 407 IPR000782 -
Ssu4g0763 448 ProSiteProfiles FAS1/BIgH3 domain profile. 261 404 IPR000782 -
Ssu4g0763 448 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0763 Ssu-Chr4 11779150 11781992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0763 - - gmx:100818575 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0763 4 11779150 11781992 Ssu4g0763 4 11779150 11781992 ECH