Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0759 ATGGACGCGGGACTGTGGAGTTCTTCCTCCAAGATCAAGTCTCGGTCTCCCTTCCAAGATCGCTTCCTTCGAAGAAAGAATTCTCAAGAAAACTTGGACAGGTTCATTCCCAATAGGTCGGCGATGGACTTTGATTACGCTCACTACATGCTCACGGAGGGTAATAGGAAGGGCAAAGAGAAAGAGAGCCCTGTGGTGACGTCACCATCCCGAGAAGCCTACCTGAAGCAACTCGCCGAGGCCGTTAACATGAACCGGACTCGAATCTTGGCCTTCAAGAACAAGCCCCCGACGCCGGTTGAACTCATTCCCAAGTCCATCCTTTCCCCTCCTCCTCCATCCAAATCCTCTAGGCCCAGACGTCACATTCCTCAGAGTTCTGAGAGGACTTTGGATGCTCCTGATATACTAGAtgatttttatttgaacttattgGACTGGGGTAGCACCAATGTTCTCAGCATTGCCCTTGGAAATACGGTTTATCTATGGAATGCCTCTGATAGCTCCACTGCTGAACTTGTTACCGTGGACGAGGAAGATGGTCCTGTTACAAGTGTTGCCTGGGCTCCTGATGGACGCCATTTAGCAATTGGTTTGAACAATTCTCATGTGCAACTCTGGGATTCCGATGCTTCTAGgcttCTAAGGACACTAAGAGGCGGGCACCAAGCACGAGTGGGTTCACTATCTTGGAACAATCATATCCTCACAACAGGAGGGATGGATGGGAGAATTGTTAACAATGATGTTAGAGTGAGGTCTCATATTATTGAATCTTATAGGGGACATCAACAGGAGGTCTGTGGACTCAAGTGGTCTCCTTCGGGACGACAATTGGCGAGTGGGGGCAATGATAATGTTATTCATATATGGGATAGGACCATGGTCTCTTCAAACTCACCAACCCATTGGCTTCACAGGTTTGAGGAGCACAGAGCTGCCGTGAAGGCACTAGCTTGGTGTCCATTCCAAGCAAATCTACTAGGTTCTGGCGGAGGTGGGGGTGATCAGTGCATTAAGTTCTGGAACACCCATACAGGGGCGTGCTTGAACTCTATTGACACAGGCTCGCAGGTGTGCGCTCTACTGTGGAACAAGAACGAGCGTGAGTTGCTTAGTTCGCATGGTTTCACCCACAACCAGCTTACTCTTTGGAAATACCCTTCAATGGTGAAGATGGCAGAGCTCAAGGGTCATACCTCCAGGGTGCTATTCATGACTCAAAGTCCAGATGGGTGCACCGTGGCCTCTGCAGCAGGAGACGAGACTCTGAGATTTTGGAATGTCTTTGGAACTCCACGGGCTTCCAAACCAGCGCCGAAAGCTCACACTGAGCCCTTTGCTCACGTAAACCGTATTCGTTGA 1368 0.4905 MDAGLWSSSSKIKSRSPFQDRFLRRKNSQENLDRFIPNRSAMDFDYAHYMLTEGNRKGKEKESPVVTSPSREAYLKQLAEAVNMNRTRILAFKNKPPTPVELIPKSILSPPPPSKSSRPRRHIPQSSERTLDAPDILDDFYLNLLDWGSTNVLSIALGNTVYLWNASDSSTAELVTVDEEDGPVTSVAWAPDGRHLAIGLNNSHVQLWDSDASRLLRTLRGGHQARVGSLSWNNHILTTGGMDGRIVNNDVRVRSHIIESYRGHQQEVCGLKWSPSGRQLASGGNDNVIHIWDRTMVSSNSPTHWLHRFEEHRAAVKALAWCPFQANLLGSGGGGGDQCIKFWNTHTGACLNSIDTGSQVCALLWNKNERELLSSHGFTHNQLTLWKYPSMVKMAELKGHTSRVLFMTQSPDGCTVASAAGDETLRFWNVFGTPRASKPAPKAHTEPFAHVNRIR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0759 455 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Ssu4g0759 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 209 - -
Ssu4g0759 455 SUPERFAMILY WD40 repeat-like 142 430 IPR036322 GO:0005515
Ssu4g0759 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Ssu4g0759 455 Gene3D - 85 432 IPR015943 GO:0005515
Ssu4g0759 455 Pfam Anaphase-promoting complex subunit 4 WD40 domain 176 234 IPR024977 -
Ssu4g0759 455 SMART WD40_4 347 387 IPR001680 GO:0005515
Ssu4g0759 455 SMART WD40_4 212 250 IPR001680 GO:0005515
Ssu4g0759 455 SMART WD40_4 254 293 IPR001680 GO:0005515
Ssu4g0759 455 SMART WD40_4 170 209 IPR001680 GO:0005515
Ssu4g0759 455 SMART WD40_4 390 429 IPR001680 GO:0005515
Ssu4g0759 455 SMART WD40_4 302 344 IPR001680 GO:0005515
Ssu4g0759 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 430 IPR001680 GO:0005515
Ssu4g0759 455 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 453 - -
Ssu4g0759 455 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 453 IPR033010 GO:0010997|GO:0097027|GO:1904668
Ssu4g0759 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
Ssu4g0759 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Ssu4g0759 455 MobiDBLite consensus disorder prediction 101 129 - -
Ssu4g0759 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Ssu4g0759 455 MobiDBLite consensus disorder prediction 103 118 - -
Ssu4g0759 455 Pfam WD domain, G-beta repeat 306 344 IPR001680 GO:0005515
Ssu4g0759 455 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Ssu4g0759 455 Pfam WD domain, G-beta repeat 394 429 IPR001680 GO:0005515
Ssu4g0759 455 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0759 Ssu-Chr4 11712040 11713989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0759 222 430 Miscellaneous Gene Families AT5G08390 21.596 2.57e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0759 K03363 - gmx:100801495 819.69