Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0749 ATGTCAAACTTCTCCTCCTGGTTCTCTCGCTTACGTTCTTCGTCCAGGTACTTCTACTGCTACCGCACTCTCCACAAAGACGCACCCACCGTCTTCACCAACCACCGAACCAGGAACGCATGGTCAACCTCTCTGGTTCCTCTGGCTCTCGCTCTTTCCGCTGGATCACTCGCTCTTCAACCACACTTCAATCCTTCCTTGTGCGACAGCGACAGAGGTGTGAGTGTTGGGGGCAAAGGTAGCACGCAATACGTTGTTAAGGGATCGCAGAAAGAATTTCCGCGGGAGCTTCTTGAGGAGTTGAAAACCGTCTGTCAGGATAACATGTCGCTTGATTATGACGAGAGATATATCCATGGAAAACCACAAAACAGCTTTCACAAGGCTGTCAATATACCAGATGTGATTGTTTATCCGAGATCTGAAGAGGAGGTTTCCAAGATTGTCAAATTATGTAACAGTCATAAGGTTCCTATTGTACCATATGGCGGAGCTACATCAATTGAGGGTCACACCTTAACCCCTCATGGAGGGGTTTGCATTGACATGTCATTAATGAAAGGAGTGAAAGTATTACATGTTGATGACATGGATGTTGTTGTTGAGCCTGGCATTGGATGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCCTATTTTTTCCACTTGATCCAGGTCCTGGTGCTAGCATTGGAGGCATGTGTGCTACACGCTGTTCTGGTTCGTTAGCTGTGAGGTATGGAACTATGCGTGATAATGTCATCAGTctcaagGTGGTTCTTGCCAATGGAGATATTGTGAAGACTGCATCACGTGCTAGGAAGAGTGCTGCAGGGTATGATCTGACCCGCTTGATGATTGGAAGTGAAGGAACACTTGGTGTTATAACAGAAGCAACACTGAGGCTTCAGAAAATTCCCCAGTATTCAGTGGTTGCTATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACCATGATGTCTGGTATACAGGTGTCAAGGGTAGAGCTACTGGATGAAGTTCAAGTGAAAGCGATCAATATTGCTAATGGGAAGAATTTGCCTGAATGTCCAACtttaatgtttgaatttataGGAACAGAGGCATATGCACGTGAACAAACACAAATTGTTCGGAAACTTGTTTCTGAGCACAATGGCTCAGATTTTCTATTCGCAGAAGAACCTGAAGCAAAAAAAGAACTTTGGAAGGTAAGGAAAGAGGCACTCTGGGCTTGCTTTGCAATGGAACCTAGTCTGGAGGCAATGATTTCAGATGTATGTGTTCCTCTATCTCACCTTGCCGATTTAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCACCACTAGTTTGCACAGTAATTGCGCATGCTGGTGATGGTAATTTCCACACGGTTATTCTATTTGATCCTAATCAAGAAGAACAGCAGCGGGAGGCGGAGAGACTCAACCAATTTATGGTTCATGCTGCCTTGTCATTAGAAGGAACGTGTACCGGTGAACATGGTGTTGGCACTGGAAAAATGAAGTATCTTGAAGAAGAACTCGGAGTGGAAGCACTGAGGacgatgaaaaaaataaaagaagtccTAGATCCCAACAATATCATGAATCCAGGAAAGCTTATCCCTCCCCATATTTGTTTCTAG 1665 0.4372 MSNFSSWFSRLRSSSRYFYCYRTLHKDAPTVFTNHRTRNAWSTSLVPLALALSAGSLALQPHFNPSLCDSDRGVSVGGKGSTQYVVKGSQKEFPRELLEELKTVCQDNMSLDYDERYIHGKPQNSFHKAVNIPDVIVYPRSEEEVSKIVKLCNSHKVPIVPYGGATSIEGHTLTPHGGVCIDMSLMKGVKVLHVDDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEATLRLQKIPQYSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQVKAINIANGKNLPECPTLMFEFIGTEAYAREQTQIVRKLVSEHNGSDFLFAEEPEAKKELWKVRKEALWACFAMEPSLEAMISDVCVPLSHLADLISRSKKELDASPLVCTVIAHAGDGNFHTVILFDPNQEEQQREAERLNQFMVHAALSLEGTCTGEHGVGTGKMKYLEEELGVEALRTMKKIKEVLDPNNIMNPGKLIPPHICF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0749 554 SUPERFAMILY FAD-binding/transporter-associated domain-like 95 307 IPR036318 GO:0050660
Ssu4g0749 554 Gene3D - 508 548 IPR016171 -
Ssu4g0749 554 SUPERFAMILY FAD-linked oxidases, C-terminal domain 311 550 IPR016164 GO:0003824|GO:0050660
Ssu4g0749 554 PANTHER D-LACTATE DEHYDROGENASE, MITOCHONDRIAL-RELATED 68 550 - -
Ssu4g0749 554 Gene3D - 92 326 IPR016169 -
Ssu4g0749 554 Pfam FAD linked oxidases, C-terminal domain 306 547 IPR004113 GO:0003824|GO:0050660
Ssu4g0749 554 ProSiteProfiles PCMH-type FAD-binding domain profile. 129 306 IPR016166 GO:0071949
Ssu4g0749 554 PANTHER D-LACTATE DEHYDROGENASE 68 550 - -
Ssu4g0749 554 Gene3D - 426 507 - -
Ssu4g0749 554 Pfam FAD binding domain 133 269 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0749 Ssu-Chr4 11552843 11563892 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0749 K00102 - gmx:100803612 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0749 4 11552843 11563892 Ssu4g0749 4 11552843 11563892 ECH