Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0748 ATGAAATTCGGGTGTGCATTCAGAGAGTACCTGCAGGAAGAGCGGGAGTGGTTCGTGGACGAGAAATGTGCGCACGTCGAATATATCAGGTTGAAGAAAGTGTTGAAGAGTTGCCGGAAAGACACTTCTTCCGATAAGGACCAGTTATGCCAGTGTCAGTCTTGCCCATTGTGTGATCAACAGTTCTTCTCCGAGTTGATGAAGGAAGCATCAGATGTAGTGGGATACTTTAGTTCAAGAGTTAAGCATCTCCTTCATCTTCATATTGCAACAGGACTGCAGAGATATGTATTGCGCTTGCGCCAGTGCTTTAAAAATGATAGGCAAGCCCTTGCCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTCAAGAAATATGATAAAGTACACAGCTCGGTGAATGGGGAGAATTTCAAATCTAGGATGCATGCTGAACACGTTGAACTTTTGCACTCACCTTGGCTAATTGAATTGGGtgctttttatttgaattctagTGGACTAGATGGTTGTGAGCTTGGTGGAGTCTATGGTCACTTTTCCTGTGATCTGAACATAAGTAAAGCTGTAATGACATTGATTCTTCCCGATTCTATTAAGCTCGAGTATAATTTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCCGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCTGCAAATCCAGAGTCGAAGTGTCCTATATGCAGAGAGGTTGGAGCTTATTCTAAGGCTGTGCGTATGCTAGAACTTGATCTGCTTATGAAAAGAAGGTACTACGTGgTGCAAAGAAAACTGGAAAGAGAGGCTGGCTGGTGA 906 0.4183 MKFGCAFREYLQEEREWFVDEKCAHVEYIRLKKVLKSCRKDTSSDKDQLCQCQSCPLCDQQFFSELMKEASDVVGYFSSRVKHLLHLHIATGLQRYVLRLRQCFKNDRQALAQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHVELLHSPWLIELGAFYLNSSGLDGCELGGVYGHFSCDLNISKAVMTLILPDSIKLEYNLTCAICLDFVFNPYALSCGHIFCKSCACSAASVMIFQGLKAANPESKCPICREVGAYSKAVRMLELDLLMKRRYYVVQRKLEREAGW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0748 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 299 IPR013083 -
Ssu4g0748 301 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Ssu4g0748 301 ProSiteProfiles SPX domain profile. 1 150 IPR004331 -
Ssu4g0748 301 SUPERFAMILY RING/U-box 209 269 - -
Ssu4g0748 301 SMART ring_2 217 265 IPR001841 -
Ssu4g0748 301 Pfam RING-type zinc-finger 217 263 IPR027370 -
Ssu4g0748 301 CDD SPX_BAH1-like 2 145 - -
Ssu4g0748 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 288 IPR033326 -
Ssu4g0748 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 288 - -
Ssu4g0748 301 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0748 Ssu-Chr4 11544199 11547185 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0748 K16275 - gmx:100781704 539.65