Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0740 ATGTTTAGGTATGCATTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGTTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAAGCCTCCTACTGGCTTTCATCCTGTGTGAGACGTCCAAAATTTATTGTTTGCACTGGTGGAAATACTTCGGGTTATATTCCTACACATACAAGCCAAAATTCAACAACCAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCATCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTAGTTCTGGTCAAGGTCAAATGGCTTCTCATCTTCATTCAGATTCAAACCTTCAAGCTAGACTTTTGGAGGATAGCAGTCCCAATAATCCTGTAGATTCATCCACTCGTAGTACTACTCAACAGTTGTCAGAAGGAAGGCATTCAGTTGAAAATGTAGCTACAGCAACTGCAGGTGTTCCACAGCATCAGGGTGCAGTTGTTCCGGAAGAAGGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACGCAGGTGGAAGTGGCGCTGGCAGCTGCTGATGGTGATCTCAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGTTGA 708 0.4308 MFRYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIEASYWLSSCVRRPKFIVCTGGNTSGYIPTHTSQNSTTSGLLSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRTLSSGQGQMASHLHSDSNLQARLLEDSSPNNPVDSSTRSTTQQLSEGRHSVENVATATAGVPQHQGAVVPEEGIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0740 235 SMART uba_6 195 232 IPR015940 -
Ssu4g0740 235 Gene3D - 152 235 - -
Ssu4g0740 235 SUPERFAMILY UBA-like 188 234 IPR009060 GO:0005515
Ssu4g0740 235 CDD UBA_At3g58460_like 196 231 - -
Ssu4g0740 235 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 193 233 IPR015940 -
Ssu4g0740 235 PANTHER RHOMBOID-LIKE PROTEIN 15 4 234 - -
Ssu4g0740 235 PANTHER DER1-LIKE PROTEIN, DERLIN 4 234 - -
Ssu4g0740 235 MobiDBLite consensus disorder prediction 106 174 - -
Ssu4g0740 235 Pfam UBA/TS-N domain 196 230 IPR015940 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0740 - - gmx:100805745 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0740 4 11447769 11452271 Ssu4g0740 4 11447769 11452271 ECH