Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0727 ATGAACGCTATTCCGAGTCTCTTCTTCGCTCTCGAATTTCTTGTCTCAGACCTAACGAGAACTAATCGTGAATGGCGGTTTCTGAAGAAGAAGGCTCTTCTGCGAAGTCAGGTCCATCTTCGTCTTCTCCGCCTCGCGCTACTACCTCTCCAAGTTGCGTTCTCAGAGGCAGCGTCTGTTCTTCAGCTCCTCTATGCTCACATCCGTTCTCCCTCCTCCAACGACGTCGTTTTTGGCAAGGAAACATCAATTGAATTGGTAACCGTTGATGAGGACGGGAATGTGCAATCTGTGTGTGATCAGCCTGTTTTTGGCACCATCAAGGATCTTGCCATATTGCCCTGGAATGAGAAATTTCGCGCACGTGATCCACAGCTGTGGGGCAAAGACCTTTTGGTTGCTACATCTGATTCTGGGAAGCTGTCGTTGCTCACATTTTGCAATGAAATGCACAGATTTGTTCCTGTAACGCATATTCAGCTATCTAATCCTGGAAACCCAAGGGATCTTCCTGGAAGAATGCTGGCAGTTGATTCCAGTGGTTGTTTTATTGCTGCCAGTGCATACGAAGTTCGGCTGGCTTTATTTTCTATGTCAATGTCCAGCGGTGATATCATTGATGAGAGAATTGTATATCCTTCTGAAAGTGAAGGGACTGCAAGTACTTCCAGAAGCATACAGAGAACCAGTATACGTGGTACTATTTGGAGCATCTGCTTCATTTCACAAGATTCCAAACAACCAAGCAAGGAGCATAATCCTGTACTAGCTGTTATTATAAATAGGAGGGGAGAATTTCTAAATGAATTGCTATTATTGGAATGGAATGTTCAAGCACGTAAAATCTTTGTTATTTCTCAGTATGTTGAAGCTGGGCCTCTAGCACATGAAATTGTTGAAGTTCCTAACTCTAGGGGACTTGCATTTCTATTCAGGGCTGGTGATGTTCTCTTAATGGATCTTAGAGATCATCGCAACCCATCCTGTGTCTGTAAGACTAACTTGAACTTTTTACCCAATGCCATGGAAGAGCAGACTTATGTGGAAGACTCTTGTAAATTACACGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAgacggtgacagtggtggtgctAATTCAGGTCTTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTACCCTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATCTAGCTGCCCTTGTGGAAATGGGGGATGGTGTGGTCCTGAAATTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATATTGCAGTTGTGGATTATCATGATGAGAAGCATGATCAGATGTTTGCTTGCTGCGGTGTGGCACCAGAGGGGTCATTAAGGATTATTCGAAATGGTATTAATGTAGAAAAGCTACATAGGACTGCTTCATATATCAAGGAGTAA 1491 0.4245 MNAIPSLFFALEFLVSDLTRTNREWRFLKKKALLRSQVHLRLLRLALLPLQVAFSEAASVLQLLYAHIRSPSSNDVVFGKETSIELVTVDEDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVPVTHIQLSNPGNPRDLPGRMLAVDSSGCFIAASAYEVRLALFSMSMSSGDIIDERIVYPSESEGTASTSRSIQRTSIRGTIWSICFISQDSKQPSKEHNPVLAVIINRRGEFLNELLLLEWNVQARKIFVISQYVEAGPLAHEIVEVPNSRGLAFLFRAGDVLLMDLRDHRNPSCVCKTNLNFLPNAMEEQTYVEDSCKLHDVDDERFSVAACALLELSDYDPMCIDGDSGGANSGLKVNLSECLYKGLPCKALLWVEGGYLAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDIAVVDYHDEKHDQMFACCGVAPEGSLRIIRNGINVEKLHRTASYIKE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0727 496 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 56 376 - -
Ssu4g0727 496 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 389 492 - -
Ssu4g0727 496 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 56 376 - -
Ssu4g0727 496 Gene3D - 59 432 IPR015943 GO:0005515
Ssu4g0727 496 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 389 492 - -
Ssu4g0727 496 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 130 490 IPR018846 -
Ssu4g0727 496 Gene3D - 437 492 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0727 Ssu-Chr4 11286310 11293249 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0727 K12830 - gmx:100799711 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0727 4 11286310 11293249 Ssu4g0727 4 11286310 11293249 ECH