Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0723 ATGCTATCCGAGTCCTCTCACGATCTCGACGACCAGATCTCCCAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCCGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTAACACTCCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTTAGAAAGTATGGTAATGCTAATGTTTGGAAGATCTTTACAgacctttttgatttttttccatTGACTGCATTGGTTCCTCATGAAGGGCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCcagGATATATCTGAACAATTCAATCACACAAACAGCCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCAtGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCTAGGAGAGGAGAACCTGATGTCACTCGTAGAACGCCTGATTACTTCTTATAA 837 0.4194 MLSESSHDLDDQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDFFPLTALVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0723 278 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 3 158 - -
Ssu4g0723 278 CDD MPP_PP2A_PP4_PP6 8 262 - -
Ssu4g0723 278 ProSitePatterns Serine/threonine specific protein phosphatases signature. 113 118 IPR006186 GO:0016787
Ssu4g0723 278 Gene3D - 159 278 IPR029052 -
Ssu4g0723 278 Gene3D - 3 158 IPR029052 -
Ssu4g0723 278 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 158 278 - -
Ssu4g0723 278 SUPERFAMILY Metallo-dependent phosphatases 6 263 IPR029052 -
Ssu4g0723 278 SMART pp2a_7 22 262 IPR006186 GO:0016787
Ssu4g0723 278 PRINTS Serine/threonine phosphatase family signature 50 77 IPR006186 GO:0016787
Ssu4g0723 278 PRINTS Serine/threonine phosphatase family signature 112 136 IPR006186 GO:0016787
Ssu4g0723 278 PRINTS Serine/threonine phosphatase family signature 79 106 IPR006186 GO:0016787
Ssu4g0723 278 PRINTS Serine/threonine phosphatase family signature 202 222 IPR006186 GO:0016787
Ssu4g0723 278 PRINTS Serine/threonine phosphatase family signature 224 240 IPR006186 GO:0016787
Ssu4g0723 278 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 3 158 - -
Ssu4g0723 278 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 158 278 - -
Ssu4g0723 278 Pfam Calcineurin-like phosphoesterase 50 211 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0723 Ssu-Chr4 11245587 11251098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0723 14 158 Calmodulin-binding Proteins AT5G63870 39.869 1.42e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0723 K04382 - csin:114287078 540.036