Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0714 ATGATGCTGAGAATTCGAAGCCGCGACGGCCTGGAGCGGGTGAGCATCGAAAACCCCCACAACGCAACAGTGTCGGAGCTGAAACGCGCAATCCAAACCCAATTGGGAATTCCCGTGCCCAACCAAACCCTCTCCACCAACCAGAACCTCCTTCTGGCGAAGTCTCTGGAAGATCTCCTCCGATTCACCGACACGTCGAACCCGGACTCGCCCCTCTCGTCTCTGAACCTCTCCCACGGCTCCATCGTGTTCCTCGCCTACGACGGCGAGCGCCGCGTCGCGGGGCCCGCCTTCAACCCCGCGGGCTCCTTCGGGCGCAAGATGACGATGGACGACCTGATCGCGAAACAGATGCGCGTGACGCGCCAGGAGAACCCGCACTGCGAGCTCGTCTCCTTCGACCGCGACTGCGCCAGCGCGTTCCAGCACTACGTGAACGAGACGCTCGCGTTCGCGGTGAAGCGCGGCGGGTTCATGTACGGCACCGTTTCGGAGGAGGGCAAGGTCGAGGTGGACTTCATCTACGAGCCTCCGCAGCAGGGCTCGGAGGAGAACCTCGTGTTCCTCAGGGACCCCGAGGAGGAGAAGCTGGTCGAGGCTATTGCCGTGGGGTTGGGGATGAGGAAGGTTGGGTTTATCTTCACGCAGACGATAAGCCAGGATAAGAAGGACTATACCTTGTCGAATAGGGAGGTGCTGCAGGCTGCGGAGTACCATGCGGAGAGTGGGTTGAAGGAGTGGGTCACTGCGGTGGTTAAGCTCGAGGTGAATGAGGATATGGCCGCGGATGTGCACTTTGAGGCGTTTCAGATGAGTGATGTGTGTGTGAGGTTGTTTAGGGAAGGGTGGTTCGAGACGGAGATAAAGGAGGACGACGATCCCAAGTTGTCTAAGATGAAGAAGGATGTGGTTGTGGGAGTTAAGGACACTAGAGAGGTGGACAATGATTTCTTCTTGGTCGTGGTTAAGATCTTTGATCATCAGGGAAAGGACCTCATTCCTTCCCTTTCATACCATTCTTTCTAA 1026 0.5741 MMLRIRSRDGLERVSIENPHNATVSELKRAIQTQLGIPVPNQTLSTNQNLLLAKSLEDLLRFTDTSNPDSPLSSLNLSHGSIVFLAYDGERRVAGPAFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDCASAFQHYVNETLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGSEENLVFLRDPEEEKLVEAIAVGLGMRKVGFIFTQTISQDKKDYTLSNREVLQAAEYHAESGLKEWVTAVVKLEVNEDMAADVHFEAFQMSDVCVRLFREGWFETEIKEDDDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIFDHQGKDLIPSLSYHSF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0714 341 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
Ssu4g0714 341 CDD Ubl_AtNPL4_like 1 85 - -
Ssu4g0714 341 ProSiteProfiles Ubiquitin domain profile. 1 85 IPR000626 GO:0005515
Ssu4g0714 341 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 102 329 IPR016563 GO:0006511
Ssu4g0714 341 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 93 IPR016563 GO:0006511
Ssu4g0714 341 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Ssu4g0714 341 Pfam NPL4 family 157 283 IPR007717 -
Ssu4g0714 341 Gene3D - 1 101 - -
Ssu4g0714 341 CDD MPN_NPL4 119 322 IPR007717 -
Ssu4g0714 341 ProSiteProfiles MPN domain profile. 130 271 IPR037518 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0714 K14015 - gmx:100779549 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0714 4 11121961 11123497 Ssu4g0714 4 11121961 11123497 ECH