Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0709 ATGTTAAGAATTGGTTTCAGAAACAGTTGCAGCATTCCCCATTCAAGGGCCTTGTTTGTTGAGAGCTTCCACAGGTTATTGTCTAGTCAGACTGGAGGGAAGCTACAAGACAAGGTTGCACTGATCACTGGCGCAGCTAGTGGAATAGGAAAGGCTACAGCCACGAAATTCATCAATAACGGAGCCAAGGTTATTATTGCTGATATTCAACAGCAACTTGGCCAAGAGACTGCAAAAGAACTAGGACCTAATGCTACTTTCATAACATGTGATGTCACTCAAGAGTCAGACATTTCCAATGCTGTGGATTTTGCTATTTCTAAATACAAACAACTTGATATCATGTACAACAATGCAGGGATAGCCTGCAGAAGTCCTCTAAGCATTGTTGACCTAGACCTGGCAGTGTTTGACAAAGTCATGGACATAAATGTGCGTGGGGTTGTGGCAGGCATCAAGCATGCAGCACGTGTAATGATCCCACGTGGAAACGGGTCCATTCTCTGCACAGCAAGTATCACAGGAGTTATGGGAGGGGTGGCCCAGCACACTTACTCAATATCCAAGTTTGCGGTTATAGGCATTGTTAAGTCTCTGGCTTCAGAGCTATGCAGGCATGGGATCCGAGTCAATTGCATATCACCTTTTGCCATCCCCACTCCTTTTGTCATGGGAGAAATGAGTCAGATATATCCTCATGTTGATGCTCAGAGACATGCAAACATTGTTCACAATGCTGGTGTCCTAAAGGGAGTGAATTGTGAACCCAATGATATTGCTAATGCTGCACTTTTTCTTGCGTCGGATCATGCCAAGTATGTTAGCGGACACAACTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATTTGGACCTTCCTGCACCAGATCAAGTGCAGTAG 903 0.4452 MLRIGFRNSCSIPHSRALFVESFHRLLSSQTGGKLQDKVALITGAASGIGKATATKFINNGAKVIIADIQQQLGQETAKELGPNATFITCDVTQESDISNAVDFAISKYKQLDIMYNNAGIACRSPLSIVDLDLAVFDKVMDINVRGVVAGIKHAARVMIPRGNGSILCTASITGVMGGVAQHTYSISKFAVIGIVKSLASELCRHGIRVNCISPFAIPTPFVMGEMSQIYPHVDAQRHANIVHNAGVLKGVNCEPNDIANAALFLASDHAKYVSGHNLVVDGGFTSFKNLDLPAPDQVQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0709 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Ssu4g0709 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Ssu4g0709 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 IPR002347 -
Ssu4g0709 300 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Ssu4g0709 300 PRINTS Glucose/ribitol dehydrogenase family signature 249 269 IPR002347 -
Ssu4g0709 300 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
Ssu4g0709 300 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Ssu4g0709 300 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Ssu4g0709 300 PRINTS Glucose/ribitol dehydrogenase family signature 185 204 IPR002347 -
Ssu4g0709 300 Pfam Enoyl-(Acyl carrier protein) reductase 44 286 - -
Ssu4g0709 300 Gene3D - 26 292 - -
Ssu4g0709 300 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 23 292 - -
Ssu4g0709 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 286 IPR036291 -
Ssu4g0709 300 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 172 200 IPR020904 GO:0016491
Ssu4g0709 300 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 23 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0709 Ssu-Chr4 11062215 11064641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0709 34 287 Miscellaneous Gene Families AT4G05530 31.538 2.18e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0709 - - gmx:100814306 533.102