Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0706 ATGCaggaagagaaggagagagTGATAATCGTTGGAGGAGGGCCTTCAGGCCTGTCGGCTGCTGCATGCTTCACGAAGCATTCTGTTCCGTACATAATCCTGGAAAGGGAAGACTGTTTCGCGTCTCTGTGGAAGAAATATTCCTACGACCGTCTCCACCTTCACCTCCGAAAGCAGTTCTGCGAGCTTCCCCACAAGCCATTCCCGCCGTCGTACCCTCCGTACGTCCCGAAGGAGCAGTTCTTGCAGTACCTCGACGACTACGTGTCCCACTTCGGGATCGCGCCTCTGTGCCGCAGAACGGTGGAGCTGGCGGAGTACGACGAGGGTTCCGGGAAATGGAGGGTGAGGGCGAGGAATGGGGACTCTGGTGAGGTTGAGGAGTACTGTGGGAGGTTTTTGGTGGTGGCTACTGGGGAAACCAGTGACCCTTTTGTGCCGGAGGTGGAAGGGTTAGGTAGCTTCCCTGGGAAGGTGCTTCATTCAACTGGGTTTGCGTCTGGGAAGGAGTTCAAAGATGAGCATGTTCTGGTTGTGGGCTCGGGGAATTCTGGCATGGAAATCGCCTTGGACCTTGTTAACCACGGTGCCAAAACCTCCATTCTGGTTCGAAGTCCGGTCCATATTCTATCAAGGGAAATGGCGAACTTGGGGCTGTTTCTGTTGAAGTATTTATCGTTGAGCACCGTGGACTCAGTGATGGTGATACTTAGCGCAATAGTTTATGGGGATGTAACCAAATATGGGGTTGCCAGGCCAAAAGAGGGTCCCTTTTATATGAAGGTAAAGTACGGCAAGTATCCAGTAATTGACGTCGGAAcctataaaaaaatcaagtctGGAGAACTGAAGGTATTGTCAGCAGAAATAGAAAGCGTAAGAGGCAAGGATGTCCTATTCAAGAATGGTGAGTTGCACCCATTTGACTCCATTGTTTTCTGCACCGGCTTCAAGAGATCAACGAACAAGTGGCTTAAGGGGGATGATTACCTACTGAATGATGATGGTCTTCCCAAGCCAAGTTACCCCATCCATTGGAAGGGAAATAATGGTTTGTACTGCGTTGGGCTATCAAGGAGAGGTTTCTATGGCGCTGCCGCTGATGCTGAAAATATAGCAAATGATGTAAGCTCCCTCACGCAACATCCctga 1152 0.4905 MQEEKERVIIVGGGPSGLSAAACFTKHSVPYIILEREDCFASLWKKYSYDRLHLHLRKQFCELPHKPFPPSYPPYVPKEQFLQYLDDYVSHFGIAPLCRRTVELAEYDEGSGKWRVRARNGDSGEVEEYCGRFLVVATGETSDPFVPEVEGLGSFPGKVLHSTGFASGKEFKDEHVLVVGSGNSGMEIALDLVNHGAKTSILVRSPVHILSREMANLGLFLLKYLSLSTVDSVMVILSAIVYGDVTKYGVARPKEGPFYMKVKYGKYPVIDVGTYKKIKSGELKVLSAEIESVRGKDVLFKNGELHPFDSIVFCTGFKRSTNKWLKGDDYLLNDDGLPKPSYPIHWKGNNGLYCVGLSRRGFYGAAADAENIANDVSSLTQHP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0706 383 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Ssu4g0706 383 PRINTS FAD-dependent pyridine nucleotide reductase signature 8 27 - -
Ssu4g0706 383 PRINTS FAD-dependent pyridine nucleotide reductase signature 175 193 - -
Ssu4g0706 383 PIRSF FMO 4 360 IPR000960 GO:0050660|GO:0050661
Ssu4g0706 383 Gene3D - 1 382 IPR036188 -
Ssu4g0706 383 Pfam Pyridine nucleotide-disulphide oxidoreductase 9 206 - -
Ssu4g0706 383 PRINTS Pyridine nucleotide disulphide reductase class-II signature 7 29 - -
Ssu4g0706 383 PRINTS Pyridine nucleotide disulphide reductase class-II signature 171 195 - -
Ssu4g0706 383 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 6 380 - -
Ssu4g0706 383 SUPERFAMILY FAD/NAD(P)-binding domain 4 214 IPR036188 -
Ssu4g0706 383 SUPERFAMILY FAD/NAD(P)-binding domain 173 372 IPR036188 -
Ssu4g0706 383 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 6 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0706 Ssu-Chr4 11027448 11031019 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0706 K11816 - gmx:102668138 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0706 4 11027448 11031019 Ssu4g0706 4 11027448 11031019 ECH