Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0705 ATGACGATGCAGGAAGCACGGGTGATAATAATTGGAGCCGGAACTTCGGGTATCGCCACTGCCGCTTGCTTAACCAAGCAATCAATACCTTACATACTCCTCGAGAGAGAGGACTGCTTCGCTTCGCTGTGGCAGAAATACACGTACGACCGTCTCCACCTCCATCTGAGGAAGCAAGTGTGCGAGCTCCCCCACTTTCCGTTCCCCAAGTCCTACCCTCACTACGTGCCTCGGAAGCAGTTCATAGAGTACTTGGGTAACTACTTGAAGCACTTCGACATCAACCCTTTGTACCAGCGCGCCGTGGAGCTGGCGGAGTACGACGGGAAAGGGATTTGGAAAGTCAAGGCTGAGAACAGAAGCTCCGGTCGGGTTGAGGAATACGCCGGAAGGTTCTTGGTGGTGGCCAGTGGCGAAACGGCCGAACCTCGCGTGCCTCAGGTTGAAGGGTTGGAGAGCTTCAATGGGAAAGTGATTCATTCAACTGGGTACAAGAACGGGAAGGGGTTTAAGGGTGAACATGTTCTCGTTGTTGGATCTGGCAATTCTGGCATGGAGATTGCACTAGACCTCGCCAATTTTGGTGCTAAACCTTCCATCATTGTTCGCAGCCCGGTTCATTTTATGTCAAGGGATATGATGTATTATGCCTCGCTTATGCTAAAGTATCTGTCGCTTAGTACGGTGGAGAAACTGGTGGTGTTGGTGAGCAGGATTGTGTATGGGGATTTGAGTGAGTATGGGATACCTTTTCCCAGTGAAGGCCCTTTCACTATGAAGTTGAAGTACGGTAAGTTCCCAATCATCGACTTGGGAACTGTCAAGAAAATTAAATCTGGAGAGATACAGGTGTTGCCAGCGGAAATAGAGAGTATAAGAGGTAACGAAGTTCTGTTCCGGGATGGCAAATCGCACCCGTTTGACACAATCATTTTCTGCACAGGCTTCAAGAGATCAACTCAAAAGTGGCTTACGGGGGGTGATGATCTTCTGAATGAGGATGGTTTTCCAAAGCCTAGTTACCCAAATCATTGGAAGGGTCCGAACGGTTTGTATTGCGTTGGACTGGCAAGAAGGGGTTTCTTTGGAGCTAACCTCGATGCCCAAAACGTAGCAAATGATATTGCCTCGTTAATTCctcaagaagaaagagaaggaatttGTGTCATGTAA 1173 0.4791 MTMQEARVIIIGAGTSGIATAACLTKQSIPYILLEREDCFASLWQKYTYDRLHLHLRKQVCELPHFPFPKSYPHYVPRKQFIEYLGNYLKHFDINPLYQRAVELAEYDGKGIWKVKAENRSSGRVEEYAGRFLVVASGETAEPRVPQVEGLESFNGKVIHSTGYKNGKGFKGEHVLVVGSGNSGMEIALDLANFGAKPSIIVRSPVHFMSRDMMYYASLMLKYLSLSTVEKLVVLVSRIVYGDLSEYGIPFPSEGPFTMKLKYGKFPIIDLGTVKKIKSGEIQVLPAEIESIRGNEVLFRDGKSHPFDTIIFCTGFKRSTQKWLTGGDDLLNEDGFPKPSYPNHWKGPNGLYCVGLARRGFFGANLDAQNVANDIASLIPQEEREGICVM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0705 390 PIRSF FMO 4 324 IPR000960 GO:0050660|GO:0050661
Ssu4g0705 390 PRINTS FAD-dependent pyridine nucleotide reductase signature 8 27 - -
Ssu4g0705 390 PRINTS FAD-dependent pyridine nucleotide reductase signature 174 192 - -
Ssu4g0705 390 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 5 390 - -
Ssu4g0705 390 Pfam Flavin-binding monooxygenase-like 7 317 IPR020946 GO:0004499|GO:0050660|GO:0050661
Ssu4g0705 390 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Ssu4g0705 390 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 5 390 - -
Ssu4g0705 390 SUPERFAMILY FAD/NAD(P)-binding domain 4 275 IPR036188 -
Ssu4g0705 390 Gene3D - 1 381 IPR036188 -
Ssu4g0705 390 PRINTS Pyridine nucleotide disulphide reductase class-II signature 170 194 - -
Ssu4g0705 390 PRINTS Pyridine nucleotide disulphide reductase class-II signature 7 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0705 Ssu-Chr4 10997757 11000753 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0705 K11816 - gmx:100777958 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0705 4 10997757 11000753 Ssu4g0705 4 10997757 11000753 ECH