Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0700 ATGCATTGTAGGAATTTGAGGGAGTTGGACTTGCAGGAGAGTGAAGTGGAGGACCTTAGTGGGCACTGGCTAAGCCATTTTCCCGATTCCTACACATCATTAGTTTCACTTAACATCTCTTGCTTAGTCAATGAGGTGAGTTTATCTGCTCTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCAGACCCTCCGCCTCAACCGTGCTGTGCTCCTTGATAGACTACCCAACTTACTTCGCCGGTGTCCTCAGCTGGTTGAGTTAGGCACGGGAGTCTACTCAACTGAAATGCGACCAGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCTGGGTGCAAGCAGATGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTCCCAGCTGTCTACCCCATCTGCTCCAGGCTAACATCGCTAAACTTGAGTTACGCTACTATTCAGAGCTCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGGTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTGTTTGCCCTTGCTGCATCATGCAAGGATTTAAGGGAGTTGAGGGTGTTTCCGTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCAGTTCTGTATTTCTGTCGTCAAATGTCTAATGCAGCCCTAAATACAATTGCGCGGAGCAGGCCTAATTTGACTCGTTTTAGGCTTTGTATTATTGAGCCTCGAACTCCTGACTATCTTACCCTTGATCCCCTGGATTCCGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAACGCCTATCCCTATCTGGTCTTCTTACCGATCGTGTTTTCGAGTATATCGGGACTTATGGGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGAAAGTGATTTGGGACTTCATCATGTGCTGTCTGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGATCTCCAGATTCAAGGCCAGAGAGTTGTCCTGTTGACAAGCTTTATATATACAGGTCTATTGCTGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAGGATGATTCTTCACTAAGGCTTGAGTGA 1302 0.4754 MHCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLVNEVSLSALERLLGRCPNLQTLRLNRAVLLDRLPNLLRRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQMKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYATIQSSDLIKLISQCPNLLRLWVLDYIEDAGLFALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALNTIARSRPNLTRFRLCIIEPRTPDYLTLDPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGSPDSRPESCPVDKLYIYRSIAGPRLDMPGFVWTMEDDSSLRLE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0700 433 Gene3D Ribonuclease Inhibitor 1 424 IPR032675 -
Ssu4g0700 433 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 3 425 - -
Ssu4g0700 433 SUPERFAMILY RNI-like 2 382 - -
Ssu4g0700 433 SMART LRR_CC_2 328 352 IPR006553 -
Ssu4g0700 433 SMART LRR_CC_2 219 243 IPR006553 -
Ssu4g0700 433 SMART LRR_CC_2 161 184 IPR006553 -
Ssu4g0700 433 SMART LRR_CC_2 136 160 IPR006553 -
Ssu4g0700 433 SMART LRR_CC_2 279 302 IPR006553 -
Ssu4g0700 433 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0700 Ssu-Chr4 10937665 10939087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0700 K14485 - gmx:100816241 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0700 4 10937665 10939087 Ssu4g0700 4 10937665 10939087 ECH
Ssu4g0700 4 10937665 10939087 Ssu7g2036 7 40478925 40481261 PCT