Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0697 ATGAGCAGCCAGTCCAAGCCGAACGTGGATGGAGTGCACACCGATGTGAAGGTGGTGGAGAGGCCAACGAGAGAAAGGCCTTACGATGTGTTGCTGCGATTTCTTGGCCTCTCACTCACTCTAGTGGCAACCATCATTGTTGGTGCTGACAATGAGACAAAAGTCATCTCCTACGCCGAAATGCAATTTAAAGCCACTGCTAAGTGGAAATATATGTCTGCTATTGTGTTTTTCTTGGTGTCAAACGCGATAGCATGCTCATATGCGGCTGTTTCTTTGGTGTTCACGGCGATGGCAAGAAGCAGTGGAAAAAATGATGCGGCACTGTTGGTGCTAACCGCTCTAGACCTTGTGATGATGGCCTTGTTGTTCTCGGCCAATGGTGCAGCCTCTGCAGTGGGAGTGATAGCACAGAAGGGGAACTCGCACGTGCAATGGATGAAAGTGTGCGACGTGTTTGATGCCTATTGTCGCCACGTGACCGCTGCCTTGGTCCTCTCTCTTATTGGCTCCACCGTCTTTCTCTTGCTCGTGCTGCATTCTGTTCTCAAACTCCATTACAGGTCGAGAAGCTTAAGCTAG 582 0.5 MSSQSKPNVDGVHTDVKVVERPTRERPYDVLLRFLGLSLTLVATIIVGADNETKVISYAEMQFKATAKWKYMSAIVFFLVSNAIACSYAAVSLVFTAMARSSGKNDAALLVLTALDLVMMALLFSANGAASAVGVIAQKGNSHVQWMKVCDVFDAYCRHVTAALVLSLIGSTVFLLLVLHSVLKLHYRSRSLS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0697 193 Pfam Casparian strip membrane protein domain 28 171 IPR006702 -
Ssu4g0697 193 PANTHER CASP-LIKE PROTEIN 1E1 10 189 - -
Ssu4g0697 193 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 31 184 IPR006459 -
Ssu4g0697 193 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 10 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0697 Ssu-Chr4 10897472 10898788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0697 - - gmx:100817307 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0697 4 10897472 10898788 Ssu4g0697 4 10897472 10898788 ECH