Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0686 ATGGGAGTGGTAACTGTTGGTGAATTGAAGCCTAGCATCTCAGGAAAAAGGACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATATCTGACGTCTCTAGTGATCTTACCATCGAAGTAGGAGCATCGACCTTCGCTCTTCACAAGTTTCCTCTCGTTTCTCGGAGTGGAAGAATTCGGAAGGTGCTGTTAGAAGCAAAAGATTCAAAAGTTCTACGCATAAGTCTCGCAAATGTGCCAGGTGGTGCAGAGGCATTTGAGCTAGCTGCCAAATTTTGCTATGGAATCAATGTTGAGTTCACCCTCTCAAATGTTGCGTTGCTACGTTGCACGGCCCATTTTCTTGAAATGACAGAAGAATTCGCAGAGAAAAACTTGGAGGCCAGAGCTGAAGCATATCTAAGGGACACAGTGCTCCCTAACATATCAAGCACCGTATATGTTCTTCACAGTTGTGAGACTCTTCTTCCCATGTCAGAGGAAATAAACCTTGTTAATAAGCTAATCAATGCAATTGCAAACAACGCGTGCAAAGAGCAGCTTACAACTGGTTTACTAAAACTCGATCACACTTTCCCTTCTAAAAGCATACCAACCATGGAACCAGAAACACCCTCAGATTGGTGGGGAAAGTCTTTCAATGTTCTAAGTCTTGAGTTCTTCCAACGAGTTGTATCTGTTGTGAAGTcaaagggactaaaacaagACATGATCagcaaaattttgatgaactaCGCACACGGTTCTCTTCAGGGGATTGGTGTTAGAGACCCCCAAGTGGTGAAAGGAAGCCTACTTGACATGGAATTGCAAAAGAAACAAAGGGTCGTTGTTGAAACCATAGTTGGTTTGCTCCCAACTCAATCAAGGAAAAGCCCGGTCCCAATGGGATTCCTCTcaagtttgttgaaagctgCAATAGCAGCATCTGCATCGACTCCTTGCAGATCTGATTTGGAGAGGCGAATTGGCCTACAACTTGACCAGGCAATTCTTGAAGACATCTTGATCCCAACAAACTCACCTCAAAACACTCACAACACAATGTATGACACAGACTCAATTCTGAggatcttttctatttttctaaactTGGACGAGGAGGATGGGGAAGATAGTGACAACTTCATTGATGAAAGCCAAATGATGTATGATTTTGACAGTCCGGGATCTCCAAAACAAAGCTCAATCATAAAGGTATCCAAATTACTGGACAGTTATCTCGCTGAAGTAGCACTAGACCCAAACTTGTTCCCATCAAAATTTACAGCACTTGCAGAACTGCTTCCAGATCATGCACGTATCTTGAGTGATGGACTCTATAGAGCTGTTGACATCTTCCTTAAGGTTCATTCAAACATGAAGGATCCAGAGAGGTACCGGTTATGCAAAACTATTGATTGTCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCCCAGAACGAAAGGCTACCTGTGCAGATGGCAGTTCAGGTTCTTTACTTCGAGCAAATGAGGCTTCGCAATGCCATGAATGGAGGGCACAACCAATTATTCTTTGGTCAGTTCCCTCAACGTTCAGGGAGTGGTGCAGGTAGTGGAGCGATTTCCCCTAGAGATAACTATGCATCAGTTAGAAGAGAGAACAGAGAACTGAAGCTTGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCACGTGTCTATGAAGCAGGAGCTTGTGAAGTCCCACCCTGCCAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGCAAGCTCAATGCTCTATTCCGGATAAATAGCATTAAGCCAATTGGTGGCAAAGCTAGTTCAGAAACTCGCTTCCCTTTTCCAAAGCGAAGGCGCCACTCCGTTTCATGA 1887 0.425 MGVVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASTFALHKFPLVSRSGRIRKVLLEAKDSKVLRISLANVPGGAEAFELAAKFCYGINVEFTLSNVALLRCTAHFLEMTEEFAEKNLEARAEAYLRDTVLPNISSTVYVLHSCETLLPMSEEINLVNKLINAIANNACKEQLTTGLLKLDHTFPSKSIPTMEPETPSDWWGKSFNVLSLEFFQRVVSVVKSKGLKQDMISKILMNYAHGSLQGIGVRDPQVVKGSLLDMELQKKQRVVVETIVGLLPTQSRKSPVPMGFLSSLLKAAIAASASTPCRSDLERRIGLQLDQAILEDILIPTNSPQNTHNTMYDTDSILRIFSIFLNLDEEDGEDSDNFIDESQMMYDFDSPGSPKQSSIIKVSKLLDSYLAEVALDPNLFPSKFTALAELLPDHARILSDGLYRAVDIFLKVHSNMKDPERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQMRLRNAMNGGHNQLFFGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTRKLSKLNALFRINSIKPIGGKASSETRFPFPKRRRHSVS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0686 628 SUPERFAMILY POZ domain 22 123 IPR011333 -
Ssu4g0686 628 Coils Coil 540 574 - -
Ssu4g0686 628 PANTHER OS12G0117600 PROTEIN 25 621 IPR043454 -
Ssu4g0686 628 Pfam NPH3 family 211 480 IPR027356 -
Ssu4g0686 628 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 621 - -
Ssu4g0686 628 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
Ssu4g0686 628 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Ssu4g0686 628 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0686 Ssu-Chr4 10769542 10773433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0686 1 454 EF-hand Containing Proteins AT2G47860 60.455 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0686 - - gmx:100776688 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0686 4 10769542 10773433 Ssu4g0686 4 10769542 10773433 ECH
Ssu4g0686 4 10769542 10773433 Ssu7g2029 7 40345350 40349648 PCT