Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0685 ATGTACGTGCCTTCGTCTTCTCTATCCGGATACTCTGTGGCCATGAATAGCCTAACGGCGAGTTTCGCAGCTCGAATATGTGCCACGCGCCGCGACCTACTCCCTATACGACACCGTCCCCTTCATCGTTTCACGATCAGACGCGTCGCCACCAAACTCAGACCTCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGCTGGAGTCCGCCGAGAAAACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACATTGTGTCTGATCCAAAGGAGTACCAGAAGTTGGCACAATCAGTGGCAGAGCTCGATGAGGTTGTGTCCACGTACCGGAGATTTAAAGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATGATGGCAACGATGAGGATATGGTGGAAATGATATCTTATGAAATCGACTCTTTGTCCAAGCAACTCTCAGAGCATGAGGACAAGCTTAAGGTGTTACTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGCTTGAAGTACGAGCTGGCACTGGTGGTGATGAGGCCGGAATATGGGCCGGTGATCTTGTCcgaatgtatgaaaaatatagtgAAAGGAATTCTTGGAAGTTTTCTCCTGTTTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAACCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCCCTAACAGAAACACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCAAAAGATATTGAACTGACAACAGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTGGAAACAGCCATTGATCTTTTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGGACACAACTTCAGAACAAGAATCGTGCTTTTCAGTTGCTTCGAGCAAAACTGTATGAGATGAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATCAAAGGAAATCACAGGTCGGTACAGGTGCACGTGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGATGAACTATGAGCTCACCTCTTTTCTTGAGGGTGATATAGAAGATGCTGTTCAGTCTTGTGCTGCAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTAGGTGCTCCGGCTGGCTGA 1287 0.4545 MYVPSSSLSGYSVAMNSLTASFAARICATRRDLLPIRHRPLHRFTIRRVATKLRPPRIVCMAEPYLITKLESAEKTWKELSVKLADPDIVSDPKEYQKLAQSVAELDEVVSTYRRFKDCEKLLEETKALAKDDGNDEDMVEMISYEIDSLSKQLSEHEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKYSERNSWKFSPVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKNRAFQLLRAKLYEMKVREQQESIRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNYELTSFLEGDIEDAVQSCAAMEQKELLEELAESVGAPAG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0685 428 Pfam RF-1 domain 275 385 IPR000352 GO:0003747|GO:0006415
Ssu4g0685 428 Gene3D - 285 344 - -
Ssu4g0685 428 SUPERFAMILY Release factor 75 416 IPR045853 -
Ssu4g0685 428 Hamap Peptide chain release factor 1 [prfA]. 66 420 IPR004373 GO:0006415|GO:0016149
Ssu4g0685 428 SMART PCRF_a_2 128 243 IPR005139 GO:0006415
Ssu4g0685 428 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 37 426 - -
Ssu4g0685 428 Gene3D - 345 426 - -
Ssu4g0685 428 Pfam PCRF domain 74 268 IPR005139 GO:0006415
Ssu4g0685 428 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 292 308 IPR000352 GO:0003747|GO:0006415
Ssu4g0685 428 Gene3D - 172 284 - -
Ssu4g0685 428 PANTHER LD18447P 37 426 - -
Ssu4g0685 428 Coils Coil 140 160 - -
Ssu4g0685 428 TIGRFAM prfA: peptide chain release factor 1 62 421 IPR004373 GO:0006415|GO:0016149
Ssu4g0685 428 Gene3D - 60 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0685 Ssu-Chr4 10734694 10739689 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0685 K02835 - gmx:100777225 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0685 4 10734694 10739689 Ssu4g0685 4 10734694 10739689 ECH