Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0680 ATGATTTCTGCAGGAGGTAGGGATGCAATAAAGGGGCTagggttagggttagggttGGGTGCTGGAAGGGGAGAGATGGTGGAGTCTGAGCTTGAAGAAGGTGAGGCATGCTCGTTCCAGAACCACGAAGATTATGATGCCACCGTTGATCCCGATGTTGCCCTCTCTTACATTGACGAAAAAATTCAAGATGTTCTGGGACACTTTCAAAAGGATTTTGAGGGTGGGGTGTCTGCAGAGAATCTGGGGGCAAAATTTGGTGGTTATGGATCATTTTTGCCCACCCATCAGCGCTCTCCTGTTTGGTCTCATCCAAGgactcctaaaaaaaataatggtcaACACACGCCCAGATCTCCCAATAATTTGCAACTGGAGGGTGGGCAGGGGGATGCTGTACAATGTTCAAATGGAACTCAGTCATTGAGACTTGGCCCAGGTTCTGCTAACTCCTTGAGGATGGCTGCAAACAAGGGTCACTCTTTAGATGATGGAACCAATCAAGAAAAATACATGACAACCACTATTGCTGATACATTCACTTCTAAGCATGAGTCTCTAAACAAGAAAATTACTAGCACATCAGACCAGAAGACACTGAAGGTTCGAATCAAAATGGGTCCTGATAATTTATCAACACAGAAAAATGCTGCAATATACAGTGAAATTGGTCTCGACGTGTCACCATCGTCGTCACTAGATGACAGCCCCTCAGAAAGTGAAGGAATTTCTCGTGGTCCTCAAGATGCTCCTTTTGAATCTCCAACCATTATCCTTCAGATTATGACAGACCTCCCTCAGCTATTGTCCCCCCTTCCTGATGAAATCATTGAATTAACTGTAAAGCAAACACGTGTCAGAGATAGCATCTTTGGTCTTGTTCATATGGATTACCCAGAAAGTTTGGTCATGTTACTAAATGAACCTAATAATGTAAAGGATGACAGAAAATTGTTAGGTGGGAGGAAAATGAAATCTCTGGAGGGTTGTGAATCCTCAATGGAAGTCAAGGGTTCTACAAAGAAGAATACTTGGAGTGATATTGGAGTGCTGTCAAGAAAGGAACAAAGTACAGATGCACTGACTATGGAGGAGCTAGTTTCAAAAACTATGAAGCTTCCACTTTTATCCAGTTCATATTCTTTCAGTGATGACTCGGTTAAGGCTGTGGATGGGCCATGTGATTCATTGAACGAAGCCAACAAAGTTATGTTGAGGGAGAAAACCTTCTCTGATCAGGGACAAAAGGAACAGGTGGAGCCAACATCTACCGAGGTGAATGGTTTTGCTGAGAAGGCAAAGGGAAGTTCTGGAAGAAAAGTTGTGGTAGATAAGGTTTCTCTTGATGACCATACAGTTAAAGACAATCCTCATGGAGATAAAAATTGCCACTCAATGATAGCTGAATCTAATGTTTCCAAAGTTAGGACAGCATCATACTCTGAAGAGGCTCCTAAGAAGGCTAATCAGAGAGGTAGCCTATGTGAACAAGACAGTATGGCATTGCCTGTTGTGACAGAACATCCATTTCCCGGGGGTAAGAAGAAGCCAAAGGGAAGTCATGGCACCATGGTTATGgagagggaaaaagaaaacttgaagGTTGGATCCTCTTTGGTTCCTAAAACAAAGAAGAGTTCTGATGATAGTTCTGCATCAAAAAATGAAACTGAAGATGTCAGAGTACAAAAAAGTCTTGGAAAGACTAGAGATACGTACAGAGATTTCTTTGGGGAATTGGATGATGAGGAGGACAGAGTGGATTCGCTGGAGACCCCTAATGAGGAAAAACTGAAGGAATCAGGGGTGGACGAGAGGTGTGCACCTACAACTAGTTATGGAGCAAAGGAGAGATCTGGTGGTAAGAAAGTTGATAAGCCATTAACAGCTGAAATATACCCTAAAACAGCCACAAATGTCTGGTGCACTGGAAATACAAATGGAACTGATGTAGAGAATGGTAAAGGGATTCCTGTAATGATACCTTCTGTTGAGATGGAAGATAATTGGGTACAGTGTGACAGGTGTCATAAATGGCGTCTTCTTCCTGTTGGAACAAATCCTGACAACCTACCTGAAAAGTGGCTGTGTAGTATGCTTAATTGGCTGCCTGACATGAATCGATGTAGCTTTAGTGAGGATGAAACCACTAAAGCACTTATTGCATTATACCAAGGGCCTCCTCTTGATGGTCAAAGCAACCTGCAAAATGTCTCTGGCAGTGTTATGGTGGGAGGAACCATGGCTACATCCCAGCATCCTGACCAACACCAGCTAAATAATGATCTGCATTCAGCACCTTGGGGGAAGAAAAAGTTTGTGAAAGAGATAtcaaattctataaataaagaCAGTTTTTCTCAATCATCATATTCTATTAAGAAAAACTCGCAGCCAGCAGTGAAAAGCAGGAGCTTAAATGATGTGAACAAATCTCCTGTCGTGAGTGAGGCTGAGGTTCCAGCAGAGAAACACAAAAATAAGCAGAGGATGCTGGAGATCAATTCTGATAGAGGTGATATGAAGAATATGAAGGTCAAAAGCAGGAGGGACCCCGATCAAGATGGTTCTAGGCCATCCAAGAAATCTAAGACTGAAAAGGTTCATTCTACCAATGAAGAGTGGATTGTAGAGGAGAGTGGGACTACTAGGAAGGTGGGTGGTCATAGCTCAAATAGCACTTTTCCAACTACTTCAGTTGGCAAAGATCGACCTAGACAGAAAGACCACTCCTCTTCGAGGGACTCCATATCAGGAAAAGACAGGCTGCCGGTTCCTGCTGAAAACGCAAAAGATAAAGGTCAGGGTTCCTTGGATGAGGGATCCCTGGATCTGGGGAATTGTGATTCAATTGGTAGTGtgaaaaagaggaaaatgaaGGGGTATCAGAATGCTCCAACTTACAGCCCAGGTAATCTTCGCCTACAGGAGAGCAAAACTTCTGAGCATGAATTCAGTGGTTCCAGGAaggaaaagaagacaaaaaattcaaaatctgaAGGCAAAGAATCAAGTGCCAGTAAAGGCAGTGGTAGGACTGACAAAAAAGTTAGTCATACAAAGAACCAGAAATTCAGGCAAAACCCTGAGAGCGGTCTGTCCCAGCGGAGCTTGGATGGCATGGACTGTTCAAAAAGGGACTTGGGGTCTGTACAGGCTTCTGTTGCTGCCACTTCAAGCTCTTCTAAGGTTTCTGGCTCTCATAAAACCAAAGCCAGCTTCCAGGAAGTGAAAGGCTCACCTGTGGAATCAGTTTCTTCATCACCTATAAGAATTTCAAATACAGATAAGTTTACAAGCAAGGAAATTATTGGGAAAGATGATTCTCATGATATTGCTGCTGTGGATAGCCCTAGAAGATGCTCAGATCATGAGGATGATGGTGGGAGTGATCGATCTGGAACAGCTAGGAAGGATAAATCTTTCACCATTGCCCACAGGTCAGATTTTCAGGACAAGGGTGTTAATAACATGTCAGATACTAAACTTAAAGCTCAAACAACCAGCTATTGTACCAATGGTGGTGTGGACACTATAGTCCCAGATGGGCCATATTCTGGCACAGAGCAGATTAAGCCTCCAGGTGAAGACAGGATTGATGTTTATTATGCTAATATGACTCGTGCAAGGAAAAATGGCATAGAATCAGGTTTGGAGGACGACAATGACAGCTGTAAGGCAGAGTCCCATGCAGATAAGGTCAAGAATAGTAGTTCTCCAAGTCAACTGAAAGATCAGTCTCCACTACGTGAGGCAAAACATAAGGATGGAAAAATTAAGTTGCAAGAGAAGTCTGGGTTCAAGCCTGACCAAAGTGAGAATATACATACTAGCAAGAAAGATTATACAGGAAAAAATGAGAGTAGGAAAAAAGAGAATCACTTAAATCGGGGTCATGACCTTCAAGACGTTAGTACTGATGGCCTATGCAAACAGGATGTATTTCATGCTCCCATTCAGAATCAGTTGCCGGACTGTGATACTGAAAGATCCACAGAGAGGCCTCTTTTGGAAAGAACTGATCAAGAAGTACATGGAAAAGGGAAGCCATTGTCATCATTGCCATCTGAAGGATCTCAAGTTGAGACATTGGGTTGTTTCTCACGACCAGTTGGTTTACATAAAGGAAATGGAGATATGGAAGTTGATCCTTCCAAAGTTGATGATGTGTCAAAGCTACAAAAAAAGCAATTGAAAAAGACTGACGAGCAAAATGGAAATCAGCAAATTGGTTCAAGAAATCCCATACTTAATGGTCACAAGTCCAACGAGCTTGATGCCGCTAGTCCAGTTAGAAGGGATTCTTACAGCCATGCTGCTAACAATGCTGTGAAAGAAGCTAAAGATCTTAAGCACCTGGCTGATCGTCTTAAGAATTCTGGATCCACTGTTGAGAGCACTAGTCTTTACTTCCAGGCAGCCCTCAAATTTCTTCATGGAGCCTCTCTGTTAGAATCTGGCAACAATGATAATGCTAAACACAGTGAGATGATTCAATCAAAGCAAGTGTATAGTAGCACAGCAAAATTGTGCGAGTTTTGTGCCCATGAATATGAGAAATCAAAAGACATGGCTTCAGCTGCTCTTGCCTACAAATGCATGGAGGTAGCATATATGAGGGTAGTATATTCTTCACACACTAGTGCAAGCAGAGATCGGCATGAGTTGCAGTCAGCACTTCAAATGATTCCTCTTGGCGAGTCTCCGTCATCATCTGCCTCTGACGTCGACAATGTTAACAACTCTACAGCAGCTGACAAAGTCACCATATCTAGGAGTGTCCATTCTCCCCAAGTAGCTGGAAACCACGTTATTGCTGCACGAAATCGTCGATTGCTCAATTTTGCTCAGGATGTTAATTTTGCCATGGAAGCCTCAAGGAAATCACGGAATGCTTTTGCAGCTGCTAATTCAAGCCCAGGTGCGGGCAAGAATGTAGATGGTATCTCCTCTATCAAGAAGGCTCTTGATTTTAACTTTCAAGATGTGGAGGGGTTACTACGTTTGTGGGTACTGCACTTTCTCCTCTTATCCAATCTCTCTTCGCAGAAAGGAAAGTCAAAGAGAGCCAGACTAAAGTTGTCTTGTACAATGTCAGGATTAGCAGTAGAACAGTATTCTTTACTTATTTTGTTGTTGATAGAGACCAAGCAGAAAACAGAAAAGGAGGGATGTACagcaagaattttttttaagtggcaGGCAATTTACTGCGAATGGATTGTCAACTTAGAGGGACGCGGTGGACATGTAAATAAGCATTATAGATTCAAGTTAGAGACATTGCAAGCTGGTTGCTGCCTTCATGCAGAATCTGACAGGTTTGAGCAACTGAGGCAAATTCCAGATAGAGCTAAAATGTAG 5364 0.4174 MISAGGRDAIKGLGLGLGLGAGRGEMVESELEEGEACSFQNHEDYDATVDPDVALSYIDEKIQDVLGHFQKDFEGGVSAENLGAKFGGYGSFLPTHQRSPVWSHPRTPKKNNGQHTPRSPNNLQLEGGQGDAVQCSNGTQSLRLGPGSANSLRMAANKGHSLDDGTNQEKYMTTTIADTFTSKHESLNKKITSTSDQKTLKVRIKMGPDNLSTQKNAAIYSEIGLDVSPSSSLDDSPSESEGISRGPQDAPFESPTIILQIMTDLPQLLSPLPDEIIELTVKQTRVRDSIFGLVHMDYPESLVMLLNEPNNVKDDRKLLGGRKMKSLEGCESSMEVKGSTKKNTWSDIGVLSRKEQSTDALTMEELVSKTMKLPLLSSSYSFSDDSVKAVDGPCDSLNEANKVMLREKTFSDQGQKEQVEPTSTEVNGFAEKAKGSSGRKVVVDKVSLDDHTVKDNPHGDKNCHSMIAESNVSKVRTASYSEEAPKKANQRGSLCEQDSMALPVVTEHPFPGGKKKPKGSHGTMVMEREKENLKVGSSLVPKTKKSSDDSSASKNETEDVRVQKSLGKTRDTYRDFFGELDDEEDRVDSLETPNEEKLKESGVDERCAPTTSYGAKERSGGKKVDKPLTAEIYPKTATNVWCTGNTNGTDVENGKGIPVMIPSVEMEDNWVQCDRCHKWRLLPVGTNPDNLPEKWLCSMLNWLPDMNRCSFSEDETTKALIALYQGPPLDGQSNLQNVSGSVMVGGTMATSQHPDQHQLNNDLHSAPWGKKKFVKEISNSINKDSFSQSSYSIKKNSQPAVKSRSLNDVNKSPVVSEAEVPAEKHKNKQRMLEINSDRGDMKNMKVKSRRDPDQDGSRPSKKSKTEKVHSTNEEWIVEESGTTRKVGGHSSNSTFPTTSVGKDRPRQKDHSSSRDSISGKDRLPVPAENAKDKGQGSLDEGSLDLGNCDSIGSVKKRKMKGYQNAPTYSPGNLRLQESKTSEHEFSGSRKEKKTKNSKSEGKESSASKGSGRTDKKVSHTKNQKFRQNPESGLSQRSLDGMDCSKRDLGSVQASVAATSSSSKVSGSHKTKASFQEVKGSPVESVSSSPIRISNTDKFTSKEIIGKDDSHDIAAVDSPRRCSDHEDDGGSDRSGTARKDKSFTIAHRSDFQDKGVNNMSDTKLKAQTTSYCTNGGVDTIVPDGPYSGTEQIKPPGEDRIDVYYANMTRARKNGIESGLEDDNDSCKAESHADKVKNSSSPSQLKDQSPLREAKHKDGKIKLQEKSGFKPDQSENIHTSKKDYTGKNESRKKENHLNRGHDLQDVSTDGLCKQDVFHAPIQNQLPDCDTERSTERPLLERTDQEVHGKGKPLSSLPSEGSQVETLGCFSRPVGLHKGNGDMEVDPSKVDDVSKLQKKQLKKTDEQNGNQQIGSRNPILNGHKSNELDAASPVRRDSYSHAANNAVKEAKDLKHLADRLKNSGSTVESTSLYFQAALKFLHGASLLESGNNDNAKHSEMIQSKQVYSSTAKLCEFCAHEYEKSKDMASAALAYKCMEVAYMRVVYSSHTSASRDRHELQSALQMIPLGESPSSSASDVDNVNNSTAADKVTISRSVHSPQVAGNHVIAARNRRLLNFAQDVNFAMEASRKSRNAFAAANSSPGAGKNVDGISSIKKALDFNFQDVEGLLRLWVLHFLLLSNLSSQKGKSKRARLKLSCTMSGLAVEQYSLLILLLIETKQKTEKEGCTARIFFKWQAIYCEWIVNLEGRGGHVNKHYRFKLETLQAGCCLHAESDRFEQLRQIPDRAKM 1787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 530 622 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1100 1147 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 902 917 - -
Ssu4g0680 1787 Pfam CW-type Zinc Finger 669 715 IPR011124 GO:0008270
Ssu4g0680 1787 ProSiteProfiles Zinc finger CW-type profile. 664 717 IPR011124 GO:0008270
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1214 1233 - -
Ssu4g0680 1787 PANTHER CW-TYPE ZINC FINGER 26 1669 - -
Ssu4g0680 1787 Coils Coil 1440 1460 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1379 1402 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 818 880 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1247 1304 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 884 901 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 590 604 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 785 1158 - -
Ssu4g0680 1787 PANTHER CW-TYPE ZINC FINGER 26 1669 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 547 580 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 474 494 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1327 1346 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1214 1304 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1403 1419 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1375 1423 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1321 1360 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 227 251 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 785 812 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1171 1198 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1024 1038 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 227 243 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 1051 1099 - -
Ssu4g0680 1787 Gene3D - 660 719 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 97 130 - -
Ssu4g0680 1787 MobiDBLite consensus disorder prediction 977 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0680 Ssu-Chr4 10653112 10665126 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0680 - - gmx:100806105 2729.12