Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0670 ATGAATGATAGGATGAGGAAGGCGAGTCGTGGTTTCACGGAGAGGGTTGTAGTTCTTCTGCTTCAGAATTTTCGCCATACTCAGAATCAGGTTCGGCAGATTCAAGCGCAACTCATCCTGCAGAACCTCCACCCCAACACCAGAATCGCTCACCTCTTCATCCGCACGTGCGAGTCTCACGGCCTTCTGGACTCCGCTCTTGTTCTCTTCACCACCCTCGTCCCCGCTCCCCACGTGTACATCTTCAACAATCTCATCAGAGCCTTCTCCCAGTCCCAAACCCCTCACACCTCTCTCGCCATATACGCCCACATGCGCCGCAACTCCGTCCACCCCAACAACTTCACCTTCCCTCCCCTCTTCAAGTCCCTCTCCGACACCCGCCACGTCACCCATGCGCAACGCGTCTACGCCCACGCCCTCAAACTCGGCCACCACCGCGACACCTACGTCCACAACTCCCTCCTCCACGTCTACGCCGCGTGCGGCCACGTGGCGCTGTGTCGACGCCTGTTCGACGAAATGCCTCGCAGGGATGTCGTGTCCTGGAGCGTGTTGATCGCGGGGTACAACAACGTTGGGAGCTACGATGATGCGTTGCTCGTCTTCGAAAACATGCAGTACGCGGGCGTGGTGCCTAATAGGGTTACCATGATAAACGCGTTGGACGCGTGTGCTCACTCTGGTAATATTGAAATGGGGAAGTGGATACACGGTGTTCTAAAGAGGGAGTTGGATGTGGTATTGGGGACGGCGTTGATTGACATGTATACCAAGTGTGGGAGAGTGGAGGAGGGGTTGGGTGTGTTCTGGAGCATGAAGGAGAAGAATGTGTTTACTTGGAACGCGGTTATTAAAGGGTTGGCTTTGGCCAAGAGTGGGCACGAGGCGATTTGGTGGTTTAACAGAATGGAGCGTGATGGGGTTAGAGCGGATGAAGTGACGCTGTTGGCTGTTCTGTCTGCGTGCAGTCACGCGGGTTTGGTGGACAAGGGAAGAAAGATTTTTGGTTTGTTGGTTGATGGGAGGTATGGGTTTTGTCCTGATGTTAGACACTATGCTTGTATGGTTGACGTGTTAGCGCGTTCTGGGCGTTTGCGTGAGGCTGTTGAGTTCATGGGGTGTATGCCTTTTGGACCCACCAAATCTATGTGGGGATCATTGTTGGTTGGTTCCAAATCTCAGGGTGACTTGGAGTTGGGCCTGCTGGCGGCTGGAAAGCTCATTCAAATGGAGCCGGAGAACACTGCCTATTATGTTCATCTGTCGAATTTGTATGCCGCCATGGGGAGATGGAGCGATGTTGAGAAAGTAAGGGGGCTCATGAAAGATAGAGAACTGACCAAGGACTTGGGGTGTAGTTCTGTGGAGGTGGAGCACCAGAGGCAGGCATGTTACTGA 1401 0.5375 MNDRMRKASRGFTERVVVLLLQNFRHTQNQVRQIQAQLILQNLHPNTRIAHLFIRTCESHGLLDSALVLFTTLVPAPHVYIFNNLIRAFSQSQTPHTSLAIYAHMRRNSVHPNNFTFPPLFKSLSDTRHVTHAQRVYAHALKLGHHRDTYVHNSLLHVYAACGHVALCRRLFDEMPRRDVVSWSVLIAGYNNVGSYDDALLVFENMQYAGVVPNRVTMINALDACAHSGNIEMGKWIHGVLKRELDVVLGTALIDMYTKCGRVEEGLGVFWSMKEKNVFTWNAVIKGLALAKSGHEAIWWFNRMERDGVRADEVTLLAVLSACSHAGLVDKGRKIFGLLVDGRYGFCPDVRHYACMVDVLARSGRLREAVEFMGCMPFGPTKSMWGSLLVGSKSQGDLELGLLAAGKLIQMEPENTAYYVHLSNLYAAMGRWSDVEKVRGLMKDRELTKDLGCSSVEVEHQRQACY 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0670 466 Gene3D Tetratricopeptide repeat domain 243 463 IPR011990 GO:0005515
Ssu4g0670 466 Gene3D Tetratricopeptide repeat domain 82 242 IPR011990 GO:0005515
Ssu4g0670 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 178 IPR002885 -
Ssu4g0670 466 Pfam E motif 397 457 IPR046848 -
Ssu4g0670 466 Pfam PPR repeat 345 376 IPR002885 -
Ssu4g0670 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Ssu4g0670 466 PANTHER - 14 463 - -
Ssu4g0670 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Ssu4g0670 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Ssu4g0670 466 Pfam PPR repeat family 276 324 IPR002885 -
Ssu4g0670 466 Pfam PPR repeat family 178 226 IPR002885 -
Ssu4g0670 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 276 IPR002885 -
Ssu4g0670 466 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 463 - -
Ssu4g0670 466 TIGRFAM PPR: pentatricopeptide repeat domain 150 181 IPR002885 -
Ssu4g0670 466 TIGRFAM PPR: pentatricopeptide repeat domain 181 214 IPR002885 -
Ssu4g0670 466 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0670 Ssu-Chr4 10530010 10531410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0670 110 458 Glycoside Hydrolase AT3G49170 33.239 1.31e-60 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0670 - - gmx:102664320 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0670 4 10530010 10531410 Ssu4g0670 4 10530010 10531410 ECH