Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0668 ATGGCAGCCAAGCCAGCTGAAGAAGCTCATCAAGGAGAAACCCTCAAGTACCAGACGTGGGTTTTGAAAGTGTTGATCCACTGCGAAGGCTGCAAAAGGAGAGTCAAGAAAATTCTTCAGGGAATTGATGGGGTTTATACAACAGAGGTTGATTCCCTGCAGCACAAGGTTACGGTCACTGGTAACGTGGATGCTGAGACTCTCATCAAGAGGCTTTCTAGATCAGGGAAACTAGTGGAGCTTTGGCCACAAAAACCTGCTGAGAAGAAAGATAATAAGAAGTCTAGGAAATCCAAAGGAGGTGGTGGAGATGTTAATAAGGAGAAGGAAGATCAAAAGAATGGTGAACCAGTAGTTGCGGATGGTGATTCCAATGAGGATTGTAAAGACGCTGCTGGTGAAGATTATGACATAGAAGGTCATAGTGATGAATGTGAGGAAGGaaatggtggtggtgaaggtggcaaaaagaagaaaaagaagaagaagaagaagaacaaaggGGAAAACGGTGGTTCTGCTCCTCCTAATAATGgaggaggagaagaaaataCTCAAATTAGTAAAGTTGATGCACTAATCCTTTCAAATTTGGCCACTTCCGTGGCTCCCAGGGATCTTATTAGCCCTCCAATTCAGCATGCCTACCCATATCCACAAGTGTACTATTCACCTCCTCCAGCTTATGAATTAAGCTATAACACAACATATCCTATCTCAAGTTCTTCATATTATGTTGGTGCCCCTATCATGCCCATGCATGCTTACACTACTGCATACTCTAGATTTGCACCACCTCCTCCACCATCTGATCCAATCAAGCACCATGGTGATGAAGAGGATGAGTACGAAGGTGGATATTGCTCCATCATGTGA 876 0.403 MAAKPAEEAHQGETLKYQTWVLKVLIHCEGCKRRVKKILQGIDGVYTTEVDSLQHKVTVTGNVDAETLIKRLSRSGKLVELWPQKPAEKKDNKKSRKSKGGGGDVNKEKEDQKNGEPVVADGDSNEDCKDAAGEDYDIEGHSDECEEGNGGGEGGKKKKKKKKKKNKGENGGSAPPNNGGGEENTQISKVDALILSNLATSVAPRDLISPPIQHAYPYPQVYYSPPPAYELSYNTTYPISSSSYYVGAPIMPMHAYTTAYSRFAPPPPPSDPIKHHGDEEDEYEGGYCSIM 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0668 291 MobiDBLite consensus disorder prediction 265 291 - -
Ssu4g0668 291 Pfam Heavy-metal-associated domain 26 77 IPR006121 GO:0046872
Ssu4g0668 291 MobiDBLite consensus disorder prediction 83 154 - -
Ssu4g0668 291 ProSiteProfiles Heavy-metal-associated domain profile. 26 81 IPR006121 GO:0046872
Ssu4g0668 291 Gene3D - 15 79 - -
Ssu4g0668 291 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 1 291 - -
Ssu4g0668 291 MobiDBLite consensus disorder prediction 80 184 - -
Ssu4g0668 291 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 1 291 - -
Ssu4g0668 291 SUPERFAMILY HMA, heavy metal-associated domain 17 82 IPR036163 GO:0046872
Ssu4g0668 291 CDD HMA 26 77 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0668 Ssu-Chr4 10521034 10522269 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0668 - - gmx:100791626 386.726