Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0665 ATGGCTGTGGTTGCAGTGCAGCAATTCCTGTGCTTCTCAGAATCAAATTGGGGGAGTATAACAAGGCCATGCATTCCCCCTCACAGCTCAATTCTTCTACGTTCACGCAAAAGGATTCAATATTCTGTCATTTCATGCTCTTCATCACAGACACCAGAAGCTGATACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTGAGTTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGCTCTATAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATacaacctaaaatttggtaCAATTCTCAATGATCCCGACCTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATTGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGAGTTAGGAGATTCTTTTATGTAGCTCTGACAGCAGCGGCAGGAATATCATTGTTTTTTACTATGCCTAGGCTATTTCGTGCAATTAATGGTGGTGATAGTGCTCCTGATCTCTTGTCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATTGTGGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAGATTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTAAGGGATACAGTTCGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTATCTTCGGCTATGCAAAGAGCAGAGAGATTTCGCACTGAGCTCCTTAGACGTGGTGTTCTGTTAATTCCTGTTATTTGGGGAGAAGGCTGGGAaacaaaaattgagaaaaaaggtTTTGGTCTACAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAGTCCATAACTGCAAAATCAAAGTTGAAATCCGAAATTAGGTTCAAGGCTGAGGTTGTATCGCCAACGGAATGGGAACGGTGGATAGGAGATCAGCAGAAGTCTGAAGGCGTTTCAGTCAGTGAAGACGTGTACATAATACTGCGCTTAGATGGACGGGTTCGAAGATCAGGGAAAGGTATGCCTGACTGGCAGCAAATTGTGAAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1314 0.4315 MAVVAVQQFLCFSESNWGSITRPCIPPHSSILLRSRKRIQYSVISCSSSQTPEADTQTAESCVNLGLEFFSKGRVKDALTQFETALSLNPNPVEAQAALYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISLFFTMPRLFRAINGGDSAPDLLSTAGNAAINIGGIVVLVALFFWDNKKEEEQIAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAMQRAERFRTELLRRGVLLIPVIWGEGWETKIEKKGFGLQPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPTEWERWIGDQQKSEGVSVSEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEAFLSKLER 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0665 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 38 437 - -
Ssu4g0665 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Ssu4g0665 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Ssu4g0665 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Ssu4g0665 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Ssu4g0665 437 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
Ssu4g0665 437 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Ssu4g0665 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 38 437 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0665 - - gmx:100784188 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0665 4 10477586 10483069 Ssu4g0665 4 10477586 10483069 ECH