Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0661 ATGGCTTCCAACGACCTCAAACATCGAGTCACAGCCGAACCAGATACCGCCGCCGCCATGAACGACAAGAAGAAGAGAGGAGAAGGCAAACGGGACAGGCGAATGGTGATGGCCAAACGCGGCCTCAGGTCGCTGGCCATAGCCGTTTGCGTCCCTCTCTCTCTTGCCGTCCTATCAGCTTGCATAGGTTCCTCCAGTGCCCGTGATGCTGTCACTTCGAGGAGGCCCTTCTGGTTCCCACCCTCGTGGGCCCTGCACTTGACGTGCCCGGCTTCAAGCTTCTTGATGGGTCTTGCCGCTTGGATGGTGTGGGCAGACGGAGGCTTCCACAGAAATCCCATGGCTCTGTCGCTTTACTTGGCTCAGCTCCTTTTCACGGTGCTCTGGGATCCCATCGTCTTCGCGGCTGGGGCAACACGGGTCGGCTTGATCGTGTGTGTTGGATTGTTTGTGAGCCAGATTGGGTGCATGCGTGTGTTTCGCCCCGTCAATCCCATCGCCGCTGAGTTGATAAAGCCTTGTTTGGCATGGGTTGCTTTTCTCTCTATTGTAAATCTTAAGCTCCTTTTTGTCTGA 576 0.559 MASNDLKHRVTAEPDTAAAMNDKKKRGEGKRDRRMVMAKRGLRSLAIAVCVPLSLAVLSACIGSSSARDAVTSRRPFWFPPSWALHLTCPASSFLMGLAAWMVWADGGFHRNPMALSLYLAQLLFTVLWDPIVFAAGATRVGLIVCVGLFVSQIGCMRVFRPVNPIAAELIKPCLAWVAFLSIVNLKLLFV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0661 191 CDD TSPO_MBR 45 189 IPR004307 GO:0016021
Ssu4g0661 191 Pfam TspO/MBR family 49 189 IPR004307 GO:0016021
Ssu4g0661 191 Gene3D TspO/MBR protein 40 190 IPR038330 -
Ssu4g0661 191 MobiDBLite consensus disorder prediction 1 33 - -
Ssu4g0661 191 PANTHER PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 21 190 IPR004307 GO:0016021
Ssu4g0661 191 PANTHER TSPO/MBR FAMILY PROTEIN 21 190 - -
Ssu4g0661 191 PIRSF PBR 34 191 IPR004307 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0661 Ssu-Chr4 10460813 10461388 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0661 K05770 - gmx:100785785 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0661 4 10460813 10461388 Ssu4g0661 4 10460813 10461388 ECH