Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0660 atgttagagaGGTGTTTGGGAGCTCAAAGGGCGAGAAGATTCCATAGAGCTCTCAGGCATTGCAAGGTCACGATCCTCTGTCTGGTCCTCACCATCGTTGTCCTGCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAGCAGGACTTCGTCGACATCCGCGACCGCTTCTACTCCCGCAGGCTCCCCGAACCCCACCGCCTTCTCGGCGAGCTTCATTCCACGGCGTCCTCTTCCTCGTCCGACGCTTCCCCTTCCACCACCAATTACAACGCCTTCGacatcaacaccatattggtCGACGAAAcggaagaaaaaacaaatcgCGAGAAACCCAACAACCCGCGCGAGCCGTATCGTCTCGGACCCAAAATCGCGGATTGGGACAAACAGAGATCTCGCTGGCTTCGCGAGAACCCCAATTTCTCGAACTTCGTCCGACCCAACAAGCCTCGCGTGCTTCTCGTGACTGGGTCGTCGCCGAAACCGTGCGAGAATCCCGTTGGGGATCATTACTTGTTGAAGTctattaagaacaaaatcgATTATTGTCGTTTGCATGGGATTGAGGTGTTTTACAACATGGCTCTCCTCGACGCCGAAATGGCAGGGTTTTGGGCGAAGCTTCCTTTGATAAGGAAGCTTCTTTTGTCTCACCCTGAGGTAGAGTTCTTGTGGTGGATGGACAGTGACGCCATGTTCACGGACATGGCGTTTGAGGTGCCGTGGGAGAGGTATAAGGAGCATAACTTAGTGATGCATGGGTGGAATGAGATGGTTTATGATGACAAGAATTGGATTGGGTTGAACACTGGGAGTTTTTTGTTGAGGAATTGCCAGTGGTCGTTGGATATTCTTGATGCTTGGGCTCCAATGGGGCCCAAAGGGAGGGTTAGGGATGAGGCTGGGAAAGTGCTCACGCGTGAGCTTAAGGGTAGGCCTGTTTTTGAAGCTGATGATCAGTCTGCGATGGTTTATTTGCTGGCTAAGGAGAGGGACAAGTGGGGTGGTAAGGTTTATCTCGAGAGTGGTTATTACTTGCATGGTTATTGGGGGATTTTGGTGGATAGGTATGAGGAGATGATTCAGAATTATCGTCCCGGTTTTGGGGATCATAGGTGGCCCTTGGTGACTCATTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCGGTGGAGAGGTGCTTGAAGCAGATGGATAGGGCTTTCAATTTTGGGGATAATCAGATACTGCAGATTTATGGGTTCACGCACAAGTCGTTGGCTAGTAGGGGAGTTAGGAGAATACGGAATGAGACTAGCAATCCTCTTGAGGTCAAAGATGAACTTGGGTTGCTTCATCCAGCATTTAAAGCACTTGAGGTATCATCATCTAAATGA 1389 0.4924 MLERCLGAQRARRFHRALRHCKVTILCLVLTIVVLRGTIGAGKFGTPEQDFVDIRDRFYSRRLPEPHRLLGELHSTASSSSSDASPSTTNYNAFDINTILVDETEEKTNREKPNNPREPYRLGPKIADWDKQRSRWLRENPNFSNFVRPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKEHNLVMHGWNEMVYDDKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGRVRDEAGKVLTRELKGRPVFEADDQSAMVYLLAKERDKWGGKVYLESGYYLHGYWGILVDRYEEMIQNYRPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLASRGVRRIRNETSNPLEVKDELGLLHPAFKALEVSSSK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0660 462 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 150 297 IPR029044 -
Ssu4g0660 462 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE-RELATED 4 461 - -
Ssu4g0660 462 Pfam galactosyl transferase GMA12/MNN10 family 151 390 IPR008630 GO:0016021|GO:0016757
Ssu4g0660 462 MobiDBLite consensus disorder prediction 102 123 - -
Ssu4g0660 462 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 4 461 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0660 Ssu-Chr4 10456171 10457559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0660 1 461 Glycosyltransferase AT3G62720 76.840 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0660 K08238 - gmx:100794266 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0660 4 10456171 10457559 Ssu4g0660 4 10456171 10457559 ECH