Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0659 ATGGAGTTGATGTCTCATTGTTCGACTTTTCTTCTTCCGCCGGCGAACCCCAACACCGCGGGTTCTCTTTCGCTAAACTACGCTCTCATTCTTCTCAATCAAAGCCTCCCGAAATTTGCTCCTCTGCTTTGGGACCACGCTAAACTACGAGTGTGCGCTGATGGAGGTGCCAATAGGGTGTATGATGAAATGCCTCGTTTCTTCCCTCATCAACAACCTTCCCATGTTCGCACCAGGTACAAGCCTGATGTAATCAAAGGAGACATGGATTCAATCAGGACAGAAGTACTTGACTTCTATGCAAAGCTgGGAACTAAGATAATTGATGAGTCTCATGATCAGGACACCACTGATTTACACAAATGTGTTGCATACATACGTGACCTCACCCCAGATACTGATCAATCAGCACTATGCATTCTTGTTGCTGGAGCACTTGGTGGGAGATTCGACCATGAGATTGGAAATATTAATGTGCTGTGCCGATTTTCCAACACACGAATTATCCTTCTATCTGATCATTGCCTCATTCACCTTCTTCCAAAGGATCACTGTCACAAAATCCTTATTCAATCTTCTGTTGAGGGTCCGCATTGTGGACTCATTCCCATTGGGATGCCGTCTGGAAGTTCTACAACCACAGGACTCAAGTGGGACCTCAATGACACGGCAATGAGTTTTGGCGGTTTAATAAGCACATCAAATATTGTAGAAGGAGAAATAGTTACAGTACAGTCTGATTCAGATCTTCTTTGGACTATTTCTATCAAGAAGCTCTAG 780 0.441 MELMSHCSTFLLPPANPNTAGSLSLNYALILLNQSLPKFAPLLWDHAKLRVCADGGANRVYDEMPRFFPHQQPSHVRTRYKPDVIKGDMDSIRTEVLDFYAKLGTKIIDESHDQDTTDLHKCVAYIRDLTPDTDQSALCILVAGALGGRFDHEIGNINVLCRFSNTRIILLSDHCLIHLLPKDHCHKILIQSSVEGPHCGLIPIGMPSGSSTTTGLKWDLNDTAMSFGGLISTSNIVEGEIVTVQSDSDLLWTISIKKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0659 259 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 178 258 IPR036371 GO:0009229
Ssu4g0659 259 Gene3D Thiamin pyrophosphokinase, catalytic domain 27 167 IPR036759 GO:0004788|GO:0005524|GO:0009229
Ssu4g0659 259 PIRSF TPK1 1 259 IPR016966 GO:0004788|GO:0005524|GO:0009229
Ssu4g0659 259 Pfam Thiamin pyrophosphokinase, catalytic domain 42 168 IPR007371 GO:0004788|GO:0005524|GO:0009229
Ssu4g0659 259 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 186 251 IPR007373 GO:0009229|GO:0030975
Ssu4g0659 259 Gene3D - 168 258 - -
Ssu4g0659 259 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 24 176 IPR036759 GO:0004788|GO:0005524|GO:0009229
Ssu4g0659 259 SMART TPK_B1_binding_a_2_a 186 250 IPR007373 GO:0009229|GO:0030975
Ssu4g0659 259 TIGRFAM thi_PPkinase: thiamine pyrophosphokinase 29 254 IPR006282 GO:0004788|GO:0006772
Ssu4g0659 259 PANTHER THIAMINE PYROPHOSPHOKINASE 1 3 257 - -
Ssu4g0659 259 PANTHER THIAMIN PYROPHOSPHOKINASE 3 257 - -
Ssu4g0659 259 CDD TPK 28 254 IPR007371 GO:0004788|GO:0005524|GO:0009229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0659 K00949 - gmx:100786303 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0659 4 10443518 10446438 Ssu4g0659 4 10443518 10446438 ECH