Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0657 ATGGAAACCAGCGCGGCCATGGATGTCGAGGAACAACCTTCACCCAACCCCAGCAACGTTAAACGCTTCGGCCTTAAAAACTCGATTCAAACAAACTTCGGCGACGACTACGTTTTCCAAATCGTCCCAAAGGATGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACGCAGTGAAACTGTATTCACCTGTGGCGGGTCAATATTATGGAGAGTGCAAGGGTCACTCTGCAACCATTAATCAGATTTTGTTTTCGGGTCCTTCAAATCCCCAGGTTTTGTGTTCCTGTTCTTCTGATGGCACTGTTAGAGCTTGGGACACACGGACATTTCAGCAGGTTTCTTCCATCAATGCTGGTTCTTCTCAAGAGGTTTTCAGCTTCTGTCTTGGAGGGACTAGTGGAAATTTAATTGCTGCCGGGTGTAAATCGCAGATAATGTTCTGGGATTGGAGAAATATGAAGCAAATTGCATGCCTCGAGGACTCTCATGTTGATGATGTCACTCAGGTTCATTTTGTTCCTAATGAACAAAGCAAGCTTATTTCTGCTTCAGTAGATGGGTTGATCTGCACATTTGATTCTACGGGAGATATCAATGACGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAGTTACCAGAAGCTTTGGTGTTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGAAATGAAGGAAACTTCTCAGATGCTCGTACTTTAGCTTCTGAAAGTTGGACTTTGGATCATGTTGACTATTTCATTGATTGTCACTACTCCAGAGAAGCTGAAAAACTATGGGTGATTGGTGGCACAAATGCTGGTACTATGGGCTACTTTCCTGTAAATTACGAAGGAGTGGCAACAATTGGAGCTGCAGATGCAATTCTTGAAGGTGGCCATGTAAGTGTTATTAGGAGTGTTTTACCCATGTCAGAATTTCATAGTGGGCCTACTAACAGTCCTAGCCAAGGCATTTTTGGATGGACGGGTGGGGAAGATGGTCGGCTATGTTGTTGGCTCTCTGATGATTCCTCTGAATCAAATCAATCTTGGATTTCAAGCACATTCATTATGAGGCCAGAAAGAACACGCAAGAAAAATCGTCATCACCCCTATTAG 1170 0.4359 METSAAMDVEEQPSPNPSNVKRFGLKNSIQTNFGDDYVFQIVPKDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSATINQILFSGPSNPQVLCSCSSDGTVRAWDTRTFQQVSSINAGSSQEVFSFCLGGTSGNLIAAGCKSQIMFWDWRNMKQIACLEDSHVDDVTQVHFVPNEQSKLISASVDGLICTFDSTGDINDDDHLESVINMGTSIAKVGIFGESYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTLASESWTLDHVDYFIDCHYSREAEKLWVIGGTNAGTMGYFPVNYEGVATIGAADAILEGGHVSVIRSVLPMSEFHSGPTNSPSQGIFGWTGGEDGRLCCWLSDDSSESNQSWISSTFIMRPERTRKKNRHHPY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0657 389 Pfam WD domain, G-beta repeat 70 107 IPR001680 GO:0005515
Ssu4g0657 389 Gene3D - 29 306 IPR015943 GO:0005515
Ssu4g0657 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 116 IPR001680 GO:0005515
Ssu4g0657 389 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Ssu4g0657 389 SMART WD40_4 110 150 IPR001680 GO:0005515
Ssu4g0657 389 SMART WD40_4 66 107 IPR001680 GO:0005515
Ssu4g0657 389 SMART WD40_4 153 194 IPR001680 GO:0005515
Ssu4g0657 389 PANTHER UNCHARACTERIZED 21 389 IPR039328 -
Ssu4g0657 389 SUPERFAMILY WD40 repeat-like 38 252 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0657 K24758 - gmx:100794786 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0657 4 10430651 10435358 Ssu4g0657 4 10430651 10435358 ECH