Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0646 ATGGCTTCGAGCTTGATTTTCAGAGGGCACGAGGCCCTACCCGTGGACGACGCCTATTCCCCGAAACCAAACAAGCCATGGCTCTCCGTCCGCTACATCCTTCGCGAACAGAGGCTCCACTTCCTCCTCCTCGGCGTGTTCCTCGCCTCCGtcttcttcttcgtcttccCATCAACGTCTCCTCCCTCCGTTTGGGCCCTCGACCCACTTCCCAACTCTTACTTGGGCCGCGACGAGTCCGCCCAGTGGCCCACAAAAGGGTACGGCGTGTCGGTGCATTCCGTGGGGAAGGTCCCGCTGGGGATTAAGAGGAAAGGGCTCCGGATCGTGGTGACGGGCGGGGCCGGGTTCGTCGGGTCCCACTTGGTGGATCGGTTGATTGCCCGAGGGGACAGCGTCATCGTGGTCGACAATTTCTTCACGGGGAGAAAAGAGAACGTGATGCACCATTTTGGCAACCCCAGGTTCGAGCTTATCCGACACGACGTCGTTGAGCCTCTCCTCTTGGAGGTCGACCAGATCTACCACCTCGCTTGCCCCGCCTCCCCTGTCCATTACAAATACAATCCGACCAATGTGATGGGGACGCTGAACATGCTGGGACTGGCCAAAAGGGTGGGCGCCAGGTTCTTGTTAACCAGTACCAGTGAGGTTTATGGAGATCCTCTTCAACACCCTCAGAAGGAGACCTATTGGGGCAACGTCAATCCCATTGGTGTTCGAAGCTGCTACGACGAGGGAAAGCGTACGGCTGAGACGTTGACCATGGATTACCATAGAGGAGCTGGAGTCCAGGTGAGAATAGCTAGGATTTTCAACACCTACGGGCCACGAATGTGCTTAGATGATGGTCGCGTTGTTAGTAACTTCGTTGCTCAGGCACTAAGGAAGGAGCCTTTGACCGTTTATGGGGATGGGAAGCAGACGAGGAGTTTCCAATATGTATCTGATTTGGTGGAGGGATTGATGCGCCTTATGGAAGGAGAACATGTGGGACCTTTCAATCTTGGAAATCCGGGTGAATTCACCATGCTTGAACTTGCCAAGGTGGTCCAAGAAACAATAGATCCAGAGGCTAAGATAGAGTATAGGCCCAACACAGAGGATGACCCACACAAGAGAAAGCCTGATATTAGTAGGGCCAAGGAGCTACTGGGCTGGGAACCCAAGATGGACCTGCGCAAGGGACTCCCTCTAATGGTTTCTGACTTCCAACAACGCATTTTTGGGGACCAAAAGGAAGGAGCAACCTCTGCCTAA 1260 0.5373 MASSLIFRGHEALPVDDAYSPKPNKPWLSVRYILREQRLHFLLLGVFLASVFFFVFPSTSPPSVWALDPLPNSYLGRDESAQWPTKGYGVSVHSVGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKYNPTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVQVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPEAKIEYRPNTEDDPHKRKPDISRAKELLGWEPKMDLRKGLPLMVSDFQQRIFGDQKEGATSA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0646 419 MobiDBLite consensus disorder prediction 359 381 - -
Ssu4g0646 419 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 1 415 - -
Ssu4g0646 419 CDD UGD_SDR_e 108 405 - -
Ssu4g0646 419 Pfam GDP-mannose 4,6 dehydratase 111 398 IPR016040 -
Ssu4g0646 419 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 415 IPR044516 GO:0042732|GO:0048040|GO:0070403
Ssu4g0646 419 Gene3D - 224 409 - -
Ssu4g0646 419 Gene3D - 103 223 - -
Ssu4g0646 419 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 105 409 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0646 Ssu-Chr4 10202557 10208812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0646 20 397 Miscellaneous Gene Families AT4G00110 25.238 5.29e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0646 K08678 - gmx:100782935 740.339