Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0643 ATGGGAGAAAAGAAGCGGAAGGAGAGGGACGAAGGTAACCGCCGAAGACAGAAGTCCAAGAGGAATCCAGACACTCAACGGAAGAAGAGAGGCCCTCGTTTGCCCTCATCTTTGCAAAAACAGCTCGACCGTTTAAACCCTACCACTTCATTCGATACCATCGATTCCGATGACGACATTGACGTATACGAGTACGAGGAAGAACGGGCCGAGGAGGAGTCCACCAAAAATAAGCGTTACGACCCTGCTTCTGTCGACGATGACCTTTCTCAAGAAATTGAGGATGAGAATGTGCAATCTGATGATGAAAGTGAGGATGACGATTACACTGGGACAAAGAGGAATGAAAATGCTATGAGTGATGATTCTGGAAAGGAAGATGATGGAAGGCATGCAAGGATGCTACAAGCAATTACTGGTATGCCAAGTGAGGCGTTTGAAGagaataagaagaaaaagaagatgatGAAGGACACTGTTATACCAGAGCTGTATCCAGAGTCAGAATATAATCCTAGTCGTGATGTTGTGGATGGTGATGGACGCATTACCATAGAGGACTTACTGAATCCTCTTCGTGAAAAACCTGGTTATGGAAAACTTAGGAAGAGGACGCAACAAATTGAGAAGAATGCTAGAACTATTCATGCACCACTTTCAAAGGCAGTTCAAGCGAAGATAGAGAGGAAGGCAGCATATGAAATATCAAAGAAAGGTGTCACTAAGTGGCAGCATATTATTCAGAGAAATAGAGAGGCACCAActattttttttgatgaaaatgtagATTTAGGGTTTTCAACTGTAGGAGCAATAGCTTCCGAATTTGAACCCAGAACtgaatttgagaagaaaatagcTGCACTAGTTCATGATGACAAAGTTATGGAAGCTCATAAAAAGGATGGTTCTAAGCTTCTTGAAATGAACAAGGTCTCTATTGAAGATGAGAAGGATAGGCAAAATCGGATTGCTAAAATGCGGAGCCTTCTTTTTCGTCATGAAATGAAGGCAAAGCATATTAAAAAGATCAAGTCCAGAACATTTCATCGTTTGTTGAAGAAAGATAGATTGAAGGCAGAAGCTTCTCAGATACAAATGGACCCTGAAGCTGCTAAGGAATATGCCATGAAACAAGAGCGTCAAAGGGCAGAGGAACGCATGACTCTGAAACACAAAAACCAGAATCGGTGGGCTAAGCGTATTTTACAGCGTCGTTTAAATAGACAAGATGAAGGAACTCGGGCTGCCATAAATGAACAACTTCAAAGGCATACTGAATTGACTAGAAAAATGCACTCTATGAAGGGTAGCAGCAGTAGCAGTGAACATACCAGTGATGAGGATGAGGATGAGGATGATGAGAACTCTGCTGGTTCTGATCAGGATAGGGCTTACAAGCTTTTgggaaaagcaaaagaaaaaacaaagaaagtgtTGGAGGAAGTGGATGAAGTTCCCAAATCAGGATTGCTTTCTTTGCCTTTTATGAGGCGTGGattggagaaaagaaaagaggcaGCTATTGAAGAAGCTAACTTTGCTTTCCAAGAATACGAAGATTCCTTGAAGAAGCTGGAGAATTGTGGTGGCTCAGAAGATCCAAAAGCTGCTTCTACCAGTGGCAGAAGAGTATTTGGAACAGCTAAAGCCCAAATATCTGATGCCAATAATAAGGTAAAATTGGATAACTTCTATGGTGGCAGTGATAGTGAGGATGACTTGGGGACCAGCAAAAATGGCAACATAGAGAATGAGGGAAGTGACCTTTTGCATAAGGATGTAAACAATGATTTGGTTGTAATTGAAGACGACACTGATACTCACCAGGAATCTGTTTTTAAGAACATTGATGAGATTATTAAAAATCCTGGGCCAAAAACTACATATGAAGTTTCCATATTTGTGTCAGATACATGGAAAAagGCAAAAAACCAAAATGAAGACACAACTATCAAGAAGTCGTCTCCAAAGCTTACAAGGCCTGTTAGGCGAGATATAAAATATACTGAAAAGGAATTTGGAGAGGATAGTGATACAGATAGTGAAGGACAGATGGTGGATGGAATTCTGTCTTCTGTTTCTAAAGTGCCTTATGAACTTCCTTCTCAAGAGGATCTCATTCGGCATGCTTTTGCGGGGGATGATGTAGAAGATGATTTTGAAAAGGATAAGCAGGAGATCCTCAACGAAGAAAATCCTGAGCCAGAAAAGCCTCTATTACTTCCTGGCTGGGGCCAGTGGACACATATACAGCAAAAGAAAGGTTTACCATCTTGGATGCTGAAAAAACATGAAGATGCGCAGAAAAAGAGGGCAGAAGTCCTCAAAAAGAGGAAGGATGCTCAGCTTAAAAATGTGATTATATCTGAGAAGATAGATAAGAAGGCTGAGAAACTACATACTAAATCATTGCCATACCCTTTTACTTCCAAAGAGGTCTTCGAACAGAGCATGCGTGTTCCCATCGGACCTGAATTTAATCCAGCTACAGCAATTGGTCCTCTTAACCGGCCTGAAGTGGTGAAGAGACCGGGTATTATTATAAAACCAATAGAGTTTGAAGAAGTGAATCCTCATGATAAATCAGAGCAACGGGGCAGGGATAAGcaaaagtttaagaaaaataaaggcaaTGGTGGCAATCCCATAAAAAAGGCGAAGGTGGGCGGAAAAAGTTAA 2682 0.3952 MGEKKRKERDEGNRRRQKSKRNPDTQRKKRGPRLPSSLQKQLDRLNPTTSFDTIDSDDDIDVYEYEEERAEEESTKNKRYDPASVDDDLSQEIEDENVQSDDESEDDDYTGTKRNENAMSDDSGKEDDGRHARMLQAITGMPSEAFEENKKKKKMMKDTVIPELYPESEYNPSRDVVDGDGRITIEDLLNPLREKPGYGKLRKRTQQIEKNARTIHAPLSKAVQAKIERKAAYEISKKGVTKWQHIIQRNREAPTIFFDENVDLGFSTVGAIASEFEPRTEFEKKIAALVHDDKVMEAHKKDGSKLLEMNKVSIEDEKDRQNRIAKMRSLLFRHEMKAKHIKKIKSRTFHRLLKKDRLKAEASQIQMDPEAAKEYAMKQERQRAEERMTLKHKNQNRWAKRILQRRLNRQDEGTRAAINEQLQRHTELTRKMHSMKGSSSSSEHTSDEDEDEDDENSAGSDQDRAYKLLGKAKEKTKKVLEEVDEVPKSGLLSLPFMRRGLEKRKEAAIEEANFAFQEYEDSLKKLENCGGSEDPKAASTSGRRVFGTAKAQISDANNKVKLDNFYGGSDSEDDLGTSKNGNIENEGSDLLHKDVNNDLVVIEDDTDTHQESVFKNIDEIIKNPGPKTTYEVSIFVSDTWKKAKNQNEDTTIKKSSPKLTRPVRRDIKYTEKEFGEDSDTDSEGQMVDGILSSVSKVPYELPSQEDLIRHAFAGDDVEDDFEKDKQEILNEENPEPEKPLLLPGWGQWTHIQQKKGLPSWMLKKHEDAQKKRAEVLKKRKDAQLKNVIISEKIDKKAEKLHTKSLPYPFTSKEVFEQSMRVPIGPEFNPATAIGPLNRPEVVKRPGIIIKPIEFEEVNPHDKSEQRGRDKQKFKKNKGNGGNPIKKAKVGGKS 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0643 893 MobiDBLite consensus disorder prediction 854 876 - -
Ssu4g0643 893 Coils Coil 765 785 - -
Ssu4g0643 893 Coils Coil 498 529 - -
Ssu4g0643 893 Pfam Utp14 protein 133 854 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 1 129 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 374 393 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 69 86 - -
Ssu4g0643 893 PANTHER U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 13 870 IPR006709 GO:0006364|GO:0032040
Ssu4g0643 893 MobiDBLite consensus disorder prediction 428 463 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 1 19 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 39 53 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 87 106 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 107 129 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 571 585 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 854 893 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 374 399 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 562 590 - -
Ssu4g0643 893 MobiDBLite consensus disorder prediction 54 68 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0643 K14567 - gmx:100784007 1432.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0643 4 10165607 10172674 Ssu4g0643 4 10165607 10172674 ECH