Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0642 ATGGCTCGCTCTTTCACTAAtactaaaattttctcttctctcgTCATTGACGGATTCTCCAACGCTCTCACCAGACGCGGGTACGCTGTGGCATCACAAAGCGCAACAAGGGGAGGAGTGGCCTCCATAAGCAACAAGATGGCACCCAAGTCAGGGGAAGACAAAGTGGTCTCTACCTACAAGGTTTCGTGGGTGCCAGATCCCGTCACTGGTTACTACAAACCCGAGAACATCAACGAGATTGACGTTGCCGAATTGCGCGCTACGCTTCTGGGcaaaaaattcaacaactaa 294 0.4592 MARSFTNTKIFSSLVIDGFSNALTRRGYAVASQSATRGGVASISNKMAPKSGEDKVVSTYKVSWVPDPVTGYYKPENINEIDVAELRATLLGKKFNN 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0642 97 PANTHER LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATED 1 94 IPR004926 -
Ssu4g0642 97 Pfam Late embryogenesis abundant protein 1 91 IPR004926 -
Ssu4g0642 97 PANTHER PROTEIN SENESCENCE-ASSOCIATED GENE 21, MITOCHONDRIAL-LIKE 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0642 Ssu-Chr4 10148326 10148727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0642 - - gmx:100500411 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0642 4 10148326 10148727 Ssu7g1994 7 39620710 39621704 PCT