Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0640 ATGCTCTCGTCCAAACCCCCGCGCCGGAAGGTCGTTCCGGCGAACGGCGACGACTCCGCCGATAAACTCGACCAGCTCCTCCTCTCCTCCGCCATCTGCAACAACGAGGACCTAGGCCCGTTCATCCGCAAGGCGTTCGTCTCCGGCAAGCCGGAGACGCTCCACCACCACCTCCGCCACTTCGCGCGCTCGAAGGAATCGGAGATCGAAGAGGTGTGCAAGGCTCACTACCAGGACTTCATCCTCGCCGTCGACGACCTCCGATCCCTCCTCTCCGACGTCGATTCGCTCAAGTCCTCCCTCTCCGACTCCAACTCCAAGCTCCAGTCCGTCGCGCGCCCGCTCCTCTCGTCGCTCGACGCCTTCGTCGAAACGCGGAACGTCTCGAAGAACGTGAACCTCGCCATCGATTCGGTCCGCACGTGCGTCAAGCTGATGGAAGTTTGCTCGCGCGCAAACCGCCACCTCGCGGACGACAACTTCTACATGGTGCTCAAGTGCGTGGACGCGATCGAGGGGGAGTACCTGGACAAAACGGCGTCGTCCACGCTGAGGCGCATGCTGGAGAAGAAGATTCCGGAGATTCGGTCCTACATCGAGAGGAAGGTGAACAAGGAGTTCGGGGACTGGTTGGTGGAGATCCGAGTCGTGAGTCGCAATTTAGGGCAATTGGCGATAGGTCTAGCCTCGTCGGCGAGACAGAGAGAAGAGGATCTGAGAATTAAGCAGCGCCAAGCGGAGGAACAGAGTAGACTCAGCGTCAGGGACTGTATTTATGCATTGGAGGGAGAGGATGAAGACGGAGTCGTCGCCGGCGGGATCGGTGAAGACGGCGGTGGACTCGCCGGGTTTGATTTGACTCCGTTGTACAGGGCCTACCATATCCACCAGACTTTAGGGTTAGAGGATCGGTTTAAGCAGTATTATTTTGAGAACCGGAAGCTTCAGTTGACTTCGGACTTTCAGGTCTCGTCGATGACTCCTTTTCTCGAGTCGCATCAAACGTTCTTTGCGCAGATTGCGGGGTTCTTCGTGGTGGAGGATCGCGTGTTGAGAACCGGGGGTGGGTTGATATCGAAAATGGAGGTTGAGAATCTGTGGGAGATTGCTGTTAGCAAGATGTGTTCTGTGTTGGAGGATCAGTTCTCCAGAATGCAAACTGCTAACCATCTTTTGCTGATTAAGGATTATGTGAGTCTGTTGGGAGTTACCCTGCGGAGATATGGGTACCCCATTGATGCGTTGCTTGATGTTTTGAGCAAGCATAGGGATAAGTACCACGAGCTGCTTTTGTCTGACTGTAGGAAGCAGATTGCGGAGGCGGTTGCTGCTGATAAATTTGAGCAGATGTTGATGAAGAAGGAGTACGAGTATTCCATGAATGTGCTTTCTTTCCAGATACAGACATCGGATATCATACCAGCTTTTCCTTACCTGGCACCGTTTTCATCCACAGTGCCGGATTGTTGTCGCATTGTGCGGTCCTTCATTGAGGATTCTGTGAGTTTCATGTCGTATGGGGGGCAGCTTGAGTTCTATGAAGTTGTTAAGAAATATTTAGACAGGCTTTTGAGTGAGGTTTTGGACGAAGCTTTAGCGAAGCTTATCAATACATCGATTAATGGTGTCTCCCAGGCAATGCAAATGGCGGCGAATATGGCTGTCTTGGAGCGTGCTTGTGACTTTTTCTTTCGCCATGCTGCACAGCTTTCGGGTGTTCCCTTGAGAATGGTGGAGAGAAGCAGAAGGCAGTTCCCCCTAAGAAAAGCACGTGATGCTGCAGAAGATATGCTCTCTGGGCTACTCAAAGCCAAAGTTGATGGATTTATGACTTTGATTGAGAATGTAAATTGGATGTGTGATGAGGCACCTCAGAGTGGAAATGAATATGTAAATGAggtcataatttatttggaaattttggTTTCAACTGCTCAACAGATATTGCCATCTCAAGTCCTTAAGAGAGTTTTACAGGAAGTTTTTGCTCACATATCGGAGAAGATAGTTGGGACTTTAGTTAGTGATTCTGTTAAGCGGTTTAATGTGAATGCTATTACTGGAATGGAAGTAGACATCCGGCTCTTAGAATCATTTGCTGATAATCAGGCCTCCCTTTTCTCTGATGGGGATGTTGATGTTCTGAAAGCATCACTTACCAGCTCAAAGCAACTGATTAATTTGCTATTAAGCAATCATCCGGAGAACTTCTTGAATCCAGTGATAAGGGAGAGGAGTTACAATACTTTGGACCACAAGAAAGTGATGATTGTTTCTGAAAAGTTGAGGGATCCTTCCGATCGGCTCTTTGGAACCTTTGGTAGTCGTGTGGCCAGGCAGAATCCGAAAAAGAAATCATTGGATACATTGATAAAAAGACTTAAGGATGTTAGCTGA 2397 0.4935 MLSSKPPRRKVVPANGDDSADKLDQLLLSSAICNNEDLGPFIRKAFVSGKPETLHHHLRHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSSLSDSNSKLQSVARPLLSSLDAFVETRNVSKNVNLAIDSVRTCVKLMEVCSRANRHLADDNFYMVLKCVDAIEGEYLDKTASSTLRRMLEKKIPEIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGLASSARQREEDLRIKQRQAEEQSRLSVRDCIYALEGEDEDGVVAGGIGEDGGGLAGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFVVEDRVLRTGGGLISKMEVENLWEIAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQIAEAVAADKFEQMLMKKEYEYSMNVLSFQIQTSDIIPAFPYLAPFSSTVPDCCRIVRSFIEDSVSFMSYGGQLEFYEVVKKYLDRLLSEVLDEALAKLINTSINGVSQAMQMAANMAVLERACDFFFRHAAQLSGVPLRMVERSRRQFPLRKARDAAEDMLSGLLKAKVDGFMTLIENVNWMCDEAPQSGNEYVNEVIIYLEILVSTAQQILPSQVLKRVLQEVFAHISEKIVGTLVSDSVKRFNVNAITGMEVDIRLLESFADNQASLFSDGDVDVLKASLTSSKQLINLLLSNHPENFLNPVIRERSYNTLDHKKVMIVSEKLRDPSDRLFGTFGSRVARQNPKKKSLDTLIKRLKDVS 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0640 798 PIRSF Sec15 4 798 IPR007225 GO:0006886|GO:0090522
Ssu4g0640 798 Pfam Exocyst complex subunit Sec15-like 458 762 IPR046361 -
Ssu4g0640 798 PANTHER SEC15 7 798 IPR007225 GO:0006886|GO:0090522
Ssu4g0640 798 Coils Coil 229 249 - -
Ssu4g0640 798 Gene3D - 412 584 IPR042045 -
Ssu4g0640 798 PANTHER EXOCYST COMPLEX COMPONENT SEC15B 7 798 - -
Ssu4g0640 798 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 590 737 IPR042044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0640 Ssu-Chr4 10128117 10130513 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0640 K19985 - gmx:100796432 1439.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0640 4 10128117 10130513 Ssu4g0640 4 10128117 10130513 ECH