Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0627 ATGTCTACGCAACCAAAGCTTGGTCGGATTCCCAGTATCAGAGACCGAGTTGAAGACACTCTCTCTGCTCACCGGAAAGGGATTTTGCAACCCCATAATTTGATTGATGAGCTTGACAACATCCATCGTGAGGATCAAGCAACACTGGATCTTAAAAATGGCCCCTTTGGTGAAATTATCAAGTCTGCACAGGAAGCCATAGTTTTGCCTCCTTTTGTGGCAATAGCAGTTCGTCCAAGACCTGGTGTTTGGGAATATGTCCGTGTTAATGTCTCTGAACTCAGCGTGGAGCAATTATCCGTTTCTGAATATCTCAGCTTCAAGGAAGCACTTGTAGATGGAAAGattaatgacaattttgtaTTGGAGCTTGATTTTGAGCCATTTAATGCCTCATTTCCTCGACCAACCCGTTCATCATCCATTGGCAATGGTGTCCAATTTCTCAATCGCCACCTTTCATCAATTATGTTTCGCAACAAAGATTCCTTGGAGCCCTTGCTTGATTTCCTCCGAGCTCACAAATACAAAGGCCATGCACTGATGTTAAATGATAGAATACAAAGCATTGCCAAACTTCAGTCTGCTTTGGCCAAGGCTGAGGATTATCTTTCTAAGCTTGCACCTGATACACTCTATTCTGAGTTTGAATATGTATTACAAGGAATGGGTTTTGAGAGAGGTTGGGGTGATACTGCTGAACGGGTATTGGAAATGATGCATCTGCTTCTGGATATTCTTCAGGCTCCTGATCCTTCTACACTAGAGACTTTTCTTGGGAGAGTGCCAATGGTATTCAATGTTGTTATATTATCTCCTCATGGCTACTTTGGACAAGCCAATGTCTTGGGCTTGCCTGACACTGGTGGGCAGGTTGTTTACATACTAGATCAAGTGCGTGCCCTTGAAAATGAGATGCTCCTTCGGATCAAGAAACAAGGACTTGATTTCACTCCTAGAATTCTAATTGTTACCAGGTTAATACCTGATGCAAAGGGGACAACATGCAACCAGCGGCTAGAAAGAGTCAGCGGTACTGACCACACTCATATTTTGCGAGTTCCATTCAGATCAGAGACAGGAATTCTCCGAAAATGGATCTCAAGGTTTGATGTGTGGCCTTATCTAGAGAGTTATGCAGAGGATGTTGCCAGTGAAATTGCTGCTGAATTACAAGGTTATCCTGATTTCATCATTGGAAACTACAGTGACGGGAATCTTGTTGCATCTTTATTGGCTTATAAAATGGGAGTTACACAGTGCACAATCGCACATGCACTTGAGAAGACAAAATATCCAGATTCAGATATATATTGGAAGAAATTTGAGGATAAATACCACTTTTCATGCCAATTCACTGCTGACCTAATAGCCATGAATAATGCTGATTTTATCATCACCAGCACATACCAAGAGATTGCAGGAACGAAAAATACTGTTGGCCAGTATGAGAGCCACACTGGTTTTACTCTTCCTGGACTCTATAGGGTTGTCCATGGCATTGATGTTTTTGATCCCAAGTTCAATATTGTCTCTCCTGGAGCAGATATGTCAATATATTTCCCCTACTCTGAAAAGCAGAACAGGCTTACAGCCCTGCATGGTCCAATTGAAAAGCTATTATATGATACTGAACAGACTGATGAATACATTGGTACACTGAAAGACAAGTCAAAGCCCATAATTTTCTCCATGGCAAGGCTAGATAGAGTAAAAAACATAACTGGATTGGTAGAAAGCTATGGTAAGAACAGCAAATTGAGGGAACTGGTCAACCTTGTCGTAGTAGCTGGTTATATTGATGTAAAGAAGTCTAGCGACAGAGAAGAAATTGCAGAAATTGAGAAGATGCATGATCTCatgaaaaagtataatttagatGGTGATTTTCGTTGGATTGCTGCCCAAACAAATAGGGCACGTAATGGGGAGCTGTATCGCTACATAGCAGACACACAAGGTGCTTTCATTCAGCCTGCTTTCTATGAAGCTTTTGGACTAACAGTTGTGGAGGCCATGACTAGTGGACTCCCCACATTTGCTACTTGCCATGGTGGTCCTGCTGAGATCATTGAGCATGGTATATCAGGATTCCACATTGATCCTTATCACCCTGATCAAGCTTCAGAGCTATTGGTTGAATTCTTCCAAAAATGCAAGGAGGACCCAAGCCATTGGAAGAAAATATCTGATGGTGGTCTTCAAAGAATTTATGAAAGGTACACGTGGAAGATTTATTCTGAAAGGCTTATGACCTTGGCGGGAGTTTATAGTTTCTGGAAATACGTTTCCAAATTGGAGAGGCGTGAAACTCGACGATATCTTGAGATGTTCTATATCCTCAAGTTCCGCGATTTGGCAAATTCTGTTCCGCTAGCAAAGGATGATGCAAGTTAA 2397 0.4147 MSTQPKLGRIPSIRDRVEDTLSAHRKGILQPHNLIDELDNIHREDQATLDLKNGPFGEIIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVSELSVEQLSVSEYLSFKEALVDGKINDNFVLELDFEPFNASFPRPTRSSSIGNGVQFLNRHLSSIMFRNKDSLEPLLDFLRAHKYKGHALMLNDRIQSIAKLQSALAKAEDYLSKLAPDTLYSEFEYVLQGMGFERGWGDTAERVLEMMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKKQGLDFTPRILIVTRLIPDAKGTTCNQRLERVSGTDHTHILRVPFRSETGILRKWISRFDVWPYLESYAEDVASEIAAELQGYPDFIIGNYSDGNLVASLLAYKMGVTQCTIAHALEKTKYPDSDIYWKKFEDKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTGFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYSEKQNRLTALHGPIEKLLYDTEQTDEYIGTLKDKSKPIIFSMARLDRVKNITGLVESYGKNSKLRELVNLVVVAGYIDVKKSSDREEIAEIEKMHDLMKKYNLDGDFRWIAAQTNRARNGELYRYIADTQGAFIQPAFYEAFGLTVVEAMTSGLPTFATCHGGPAEIIEHGISGFHIDPYHPDQASELLVEFFQKCKEDPSHWKKISDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPLAKDDAS 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0627 798 Pfam Glycosyl transferases group 1 553 728 IPR001296 GO:0016757
Ssu4g0627 798 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 284 752 - -
Ssu4g0627 798 Gene3D - 135 264 - -
Ssu4g0627 798 PANTHER SUCROSE SYNTHASE 1 798 - -
Ssu4g0627 798 Gene3D Glycogen Phosphorylase B; 516 743 - -
Ssu4g0627 798 PANTHER - 1 798 IPR012820 GO:0005985|GO:0016157
Ssu4g0627 798 Pfam Sucrose synthase 20 542 IPR000368 GO:0005985|GO:0016157
Ssu4g0627 798 Gene3D Glycogen Phosphorylase B; 269 786 - -
Ssu4g0627 798 TIGRFAM sucr_synth: sucrose synthase 20 792 IPR012820 GO:0005985|GO:0016157
Ssu4g0627 798 Gene3D - 17 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0627 Ssu-Chr4 9950311 9956065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0627 3 796 Glycosyltransferase AT4G02280 81.807 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0627 K00695 - gmx:100802045 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0627 4 9950311 9956065 Ssu4g0627 4 9950311 9956065 ECH