Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0626 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCGTGCAAGCTGTGGAGAGGGGATGGAAGCGGAAGATTCGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGTCCTCACTGGGTTTCTTGCGAGCACTGCTCATCCTCACCGGTGTTCGGACTTGTCGAATGGGCGTAACGGAAGGAGGAACCGGTataattttGGATGTGAAGCCTTTAGTGTAGGTGGTTCATGTCCTGATGAAGCACTTGATATCGTCCTTTTTGAAGGATTCTCTAGGTCTATCTTGTCTCAAGTTGCTCCTACAAGATGGCATTTATGTTGTTCTTCAGCCTTCTCTTTGGACACTGCCACCGAGTTTTCCGTGGAAAATCTGTGGGAGGATCTTAAACCTGCAATCTCGTACCTGTCTCCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCATTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGGCACATTGTGGAAGGAGAGACCAAGGTGTCAAAATTGGGAAAGTTGAAGtataagaatgaaaatgatTCTGCTCAAGATGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTAATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAGACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATGTACACAAATGCAGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAAgcaaacaaaatattgatgaaGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTTAAAACGGAAGTTCGTGCTGTATGTAAAGAGCCTTACAGGTTAAGCCAAATCTCAATGTCAATGTCACCATTTTGTTTATCCAGCTATTCATGTTGGTTGATGTGTTTGACATCATATACATTTTACATTATCTATAAAGCTGTTCTCAAATCGAAAAGTTCGATCAGTGAGATTAACCAAATTGCACAGCTTCGTATTATTATTAAACCAAAGCCATGCATTGGCGTTGGGCCTTTATGCAATCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGAGCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCATACCACTGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCcagATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGCTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTTAACAATGCCAATATTGCACTCAGAATTGGTTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTACTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCTCCCGCTCATGTACTTGCAAATGCAGAAGTTGTTGAGATAATCacatataatGCACTTTCCAGCAAATCGGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTGCTGATATCACTACGGAAGCAGTCAATGACTTTGTCACTGATTCTGATGGGGATAGTGAATCTGAAGAACTGTCAAAAGGTTCCAGTGGTTCCAAATATACGTGGGGTAAAATGTTTGTGAATGGAGTGGAAATATCAACTTCAGGAAGAAGTGAGACAGTCCTCCAAAGTAAGAATGGAAGTGTTTGGATCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAATGGAAAAGGGGAGATGTTACTGCAGGGAAACATTGTCGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATTCAATGGTTATCTGTAGTATGTATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCAGGCATAGCCATTTGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTAGAaggaaatttagaaaatttgGTCAGTGCTTGCTCTAAAGTAGATCTGATACTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGTTTGATGGAAGACCGTGGCGTTCTCGAATGCTAG 2745 0.4197 MASASSMSVSLECVNACKLWRGDGSGRFDCSLLSCAWKAPRVLTGFLASTAHPHRCSDLSNGRNGRRNRYNFGCEAFSVGGSCPDEALDIVLFEGFSRSILSQVAPTRWHLCCSSAFSLDTATEFSVENLWEDLKPAISYLSPKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSAQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKILMKKIQDDQFLDLLTVKTEVRAVCKEPYRLSQISMSMSPFCLSSYSCWLMCLTSYTFYIIYKAVLKSKSSISEINQIAQLRIIIKPKPCIGVGPLCNPQQICYHVLGLIHGIWTPIPRAVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSDGDSESEELSKGSSGSKYTWGKMFVNGVEISTSGRSETVLQSKNGSVWIPKVNGKHNKHVQHESFNGKGEMLLQGNIVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTALATAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0626 914 Gene3D Beta Polymerase, domain 2 404 510 IPR043519 -
Ssu4g0626 914 SMART hd_13 167 287 IPR003607 -
Ssu4g0626 914 Pfam HD domain 152 309 - -
Ssu4g0626 914 Gene3D Hypothetical protein af1432 123 324 - -
Ssu4g0626 914 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Ssu4g0626 914 Gene3D - 827 893 - -
Ssu4g0626 914 SUPERFAMILY TGS-like 582 654 IPR012676 -
Ssu4g0626 914 SUPERFAMILY ACT-like 827 886 IPR045865 -
Ssu4g0626 914 Gene3D - 588 663 IPR012675 -
Ssu4g0626 914 CDD ACT 828 883 - -
Ssu4g0626 914 MobiDBLite consensus disorder prediction 706 725 - -
Ssu4g0626 914 ProSiteProfiles ACT domain profile. 827 898 IPR002912 -
Ssu4g0626 914 CDD HDc 169 300 IPR003607 -
Ssu4g0626 914 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 382 - -
Ssu4g0626 914 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 410 914 - -
Ssu4g0626 914 SUPERFAMILY Nucleotidyltransferase 411 528 IPR043519 -
Ssu4g0626 914 ProSiteProfiles TGS domain profile. 591 654 IPR004095 -
Ssu4g0626 914 CDD NT_Rel-Spo_like 419 518 IPR007685 GO:0015969
Ssu4g0626 914 CDD TGS_RSH 596 654 IPR033655 -
Ssu4g0626 914 Pfam Region found in RelA / SpoT proteins 414 524 IPR007685 GO:0015969
Ssu4g0626 914 Pfam TGS domain 595 654 IPR004095 -
Ssu4g0626 914 SUPERFAMILY HD-domain/PDEase-like 136 324 - -
Ssu4g0626 914 SMART RelA_SpoT_2 409 530 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0626 Ssu-Chr4 9921439 9929024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0626 181 526 EF-hand Containing Proteins AT3G17470 27.528 6.43e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0626 K00951 - gmx:100814134 1635.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0626 4 9921439 9929024 Ssu4g0626 4 9921439 9929024 ECH