Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0621 ATGATGGAGTCCTGTGATTGTATAGACACACAATATCCGCCAGATGAACTTCTGGTCAAGTATCAGTATATCTCGGATGTGCTAATTGCCCTTGCTTATTTTTCGATTCCAGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGGGCAACTCATTTCATAAACTTGTGGACATTCTCCCCGCACTCCAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCAATTGTGTCCTGTGCGACCGCGCTGATGCTTGTCCACATTATTCCTGATCTGTTGAGCGTCAAGACGCGCGAATTGTTCCTTAAGAACAAGGCTGAGGAGCTTGACAGGGAGATGGGACTCATTCTTACTCAAGAAGAAGCCGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACCATTCTGAAGACTACTCTTGTGGAGCTGGGGAGGACTTTAGGCTTGGAGGAATGTGCTTTATGGATGCCTTCGAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCAAGTACAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAACGAAGTTTTCAACAGCCCTCGAGCTATGCGGATACCACCCACCTGTCCACTGGCCAGGATCAGACCTCTCATGGGAAGATATGTGCCGCCCGAAGTTGTTGCTGTTCGGGTGCCACTTTTAAATCtgtcaaattttcaaattaatgattGGCCCGATATTTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACCGATACCGTTAGAAAATGGCGAGACCATGAATTGGAACTTGTTGATGTGGTAGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGTGCCCGTGATCAACTCATGGAGCAGAATGTTGCTTTAGATTTAGCTCGGCGAGAGGCAGAGATGGCAATTCATGCTCGCAATGATTTTCTTGCTGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCCTCACTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGAGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCCACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAATGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGGTCGTTGAACTGATAAAGCCTATAGCGTCTGTGAAAAAATTACCTATTACTTTAATTCTGGCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGGCTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTGTAAGAGCATCTATTGCAAAACCAGAGTCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCAAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGGATTTCCCCACAAGATATTCCGCATCTCTTTACCAAGTTTGCTCAGTCTCGGAGTGGACCAGCTCGACCTAGCAATGGTGCAGGTCTTGGGCTTGCCATTTGTAAGAGATTTGTAAACCTCATGGGAGGTCACATATGGATTGAGAGTGAGGGCCTTGACAAAGGAAGCACAACTACATTTATAGTCAAACTTGGGATTTGTGGCAATCCAGATCCATCAGATCATCAAGCTGCAAACAGAAGCCAAGCATATAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTTATCAAAGATGAAGACGACACTGGTTTTTCTACTCGACGCAATCAAAGAAGTTTCTAA 1911 0.4401 MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEEAGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYQVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLMGRYVPPEVVAVRVPLLNLSNFQINDWPDISAKSYAIMVLILPTDTVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGVLGEVVELIKPIASVKKLPITLILAPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSVRASIAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGISPQDIPHLFTKFAQSRSGPARPSNGAGLGLAICKRFVNLMGGHIWIESEGLDKGSTTTFIVKLGICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0621 636 Pfam His Kinase A (phospho-acceptor) domain 345 409 IPR003661 GO:0000155|GO:0007165
Ssu4g0621 636 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 586 IPR003594 -
Ssu4g0621 636 PANTHER ETHYLENE RESPONSE SENSOR 1 2 635 - -
Ssu4g0621 636 SMART HKATPase_4 456 590 IPR003594 -
Ssu4g0621 636 CDD HATPase_EvgS-ArcB-TorS-like 461 586 - -
Ssu4g0621 636 ProSiteProfiles Histidine kinase domain profile. 351 588 IPR005467 -
Ssu4g0621 636 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Ssu4g0621 636 PRINTS Bacterial sensor protein C-terminal signature 512 526 IPR004358 GO:0016310|GO:0016772
Ssu4g0621 636 PRINTS Bacterial sensor protein C-terminal signature 530 540 IPR004358 GO:0016310|GO:0016772
Ssu4g0621 636 PRINTS Bacterial sensor protein C-terminal signature 547 565 IPR004358 GO:0016310|GO:0016772
Ssu4g0621 636 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 635 - -
Ssu4g0621 636 SMART gaf_1 159 318 IPR003018 GO:0005515
Ssu4g0621 636 Gene3D - 409 589 IPR036890 -
Ssu4g0621 636 Gene3D - 139 309 IPR029016 -
Ssu4g0621 636 Pfam GAF domain 159 308 IPR003018 GO:0005515
Ssu4g0621 636 Gene3D - 310 408 - -
Ssu4g0621 636 CDD HisKA 342 405 IPR003661 GO:0000155|GO:0007165
Ssu4g0621 636 SMART HisKA_10 344 409 IPR003661 GO:0000155|GO:0007165
Ssu4g0621 636 SUPERFAMILY GAF domain-like 159 320 - -
Ssu4g0621 636 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 586 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0621 Ssu-Chr4 9872597 9876467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0621 2 600 Miscellaneous Gene Families AT2G40940 77.129 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0621 K14509 - gmx:100802569 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0621 4 9872597 9876467 Ssu4g0621 4 9872597 9876467 ECH