Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0613 ATGGTGAAAACGGCGTCGTCCCCTTCTTCCTCTCCGGTGACCATAACGGTGTCGTCCGGAGGAGGACGACGCAGAAGCATGGGACTAACCAGTCCCGTTCCACGCGCCTCAGTCTCCAACACCCCCAACTCCCCTCTCCGAGCCTCCGGCGGCGGAAGGAGGCTCTCCGGCGCCGGCACGTCCAACGACGGCGGCGGCGGCATGGAAGAAATTAACTCCGAATACGTAACATACACCGTCCACATTCCTCCGACGCCCGACCGCAGGCCCCTGACAACCTCAGAAGACGGAAAGAGCAGCACGAGCTTCATCTCCGGCACGATCTTCACCGGAGGGTTCAACTCCGTGACGCGCGGCCACGTGATGGAGTGCTCCACGGAGCGCGACGCGGCGCAGGCGAAAGCGGCGTCGGTTTGCGGAATGAAGGGCTGCGACGAGGAAGCGATGAAGGGGTTTGGTCCGTGCGAGTGCGGGTTCAGGATTTGCAGGGAGTGTTACTTGGAGTGTGGAGGGGGGAAGTGTCCCGGGTGCAAAGAGTCTTATAAGTATGTGAGCGATggtgaagaagaagatgaggatcAGCATCTGCCTTTGCCTTCCATGGCGGAGTTCAAGTTGGACAAGAGGCTTTCCCTTGTGAAATCATTCAAAGCGCAGAATCATCCTCCTGATTTTGACCACACGAGATGGTTGTTTGAGACCAAGGGGACCTATGGGTATGGAAACGCTGTGTGGCCTAAAGATGGGTATGGTGCCAACGGGTTTGAAGCCCCTCCGGAATTCGGAGAGAAAGCTCGGAGACCCTTGACCCGTAAGGTTGCTGTTTCAGCTGCTATTCTCAGTCCTTATAGGTTGCTTATTCTGCTGCGTCTTGCTGCATTGGGTCTATTTCTTACGTGGAGGATTAGACACCCCAACCATGAAGCGATTTGGCTGTGGGCGATGTCCATAACTTGTGAGCTATGGTTTGCATTTTCGTGGCTTCTTGATCAGCTTCCTAAGCTGTGTCCTGTGAACAGAGTCACCGATCTGTCTGTTCTGAAAGAGCGGTTTGAGTCTCCAAACCTGCGCAATCCGAAAGGGAGACCCAGAAAAGGAGCCTCCTCTTGTCACTGCCAACACCATTCTCTCGATCCTTGCAGTGATTACCCAGTGGAGAAGGTTGCGTGTTACTTGTCTGATGATGGTGGGGCTCTGTTGACGTTTGAAGCTCTTGCTGAGACTGCTAGCTTTGCTAGAATTTGGGTTCCTTTCTGTCGGAAGCACCAGATAGAGCCTCGGAATCCAGAAGCTTATTTTGGGCAGAAGCGTGACTTTCTTAAGAATAAGGTCCGGTTGGACTTTGTGAGAGAGAGGAGAAGGGTGAAGAGGGAATATGATGAGTTCAAAGTGAGGATAAACTCCTTGCCGGAATCCATAAGGAGAAGATCCGATGCTTACAATGCTCACGAGGAGTTGCGGGCCAAGAAGAAACAGATGGAAGCAGGTTCCAGTGTCTCTGAACCCATTAAGGTTCCTAGAGCTACATGGATGTCCGATGGTTCTCATTGGCCAGGAACTTGGGCATCAGCAGAACAAGACCACTCAAGAGGGGACCATGCTGGTATAATTCAGGCAATGTTGGCTCCACCAAATGCAGAACGAGAATATGGTTCCGAAGCTGATGGGAGAACTTGA 1677 0.5247 MVKTASSPSSSPVTITVSSGGGRRRSMGLTSPVPRASVSNTPNSPLRASGGGRRLSGAGTSNDGGGGMEEINSEYVTYTVHIPPTPDRRPLTTSEDGKSSTSFISGTIFTGGFNSVTRGHVMECSTERDAAQAKAASVCGMKGCDEEAMKGFGPCECGFRICRECYLECGGGKCPGCKESYKYVSDGEEEDEDQHLPLPSMAEFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNAVWPKDGYGANGFEAPPEFGEKARRPLTRKVAVSAAILSPYRLLILLRLAALGLFLTWRIRHPNHEAIWLWAMSITCELWFAFSWLLDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRPRKGASSCHCQHHSLDPCSDYPVEKVACYLSDDGGALLTFEALAETASFARIWVPFCRKHQIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEAGSSVSEPIKVPRATWMSDGSHWPGTWASAEQDHSRGDHAGIIQAMLAPPNAEREYGSEADGRT 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0613 558 MobiDBLite consensus disorder prediction 32 47 - -
Ssu4g0613 558 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g0613 558 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 381 554 - -
Ssu4g0613 558 MobiDBLite consensus disorder prediction 1 100 - -
Ssu4g0613 558 MobiDBLite consensus disorder prediction 519 558 - -
Ssu4g0613 558 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 381 554 - -
Ssu4g0613 558 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 86 361 - -
Ssu4g0613 558 Pfam Cellulose synthase 381 553 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu4g0613 558 Pfam RING/Ubox like zinc-binding domain 149 182 - -
Ssu4g0613 558 SUPERFAMILY RING/U-box 149 183 - -
Ssu4g0613 558 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 86 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0613 Ssu-Chr4 9772192 9774551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0613 78 551 Glycosyltransferase AT3G03050 53.996 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0613 K00770 - gmx:100804687 912.909