Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0611 atgttgCGAATGACGAGATTCTCGGGGATTTTCTCCGCCGCAATGTTCATCATCATTGTTCTCTCCCCCTCCCTCCAATCCCAAGCCATTCGATCCTCCAACCGATTCTCCTTCCGGAAGGCCCCTCCGTTCCGCAATGCCGACGAATGCGCTTGGATTTCCGGTACCGAAACAACCGTGTGCGACCCTTCCTTGGTCCACGTGGCCATAACCCTAGACGTCGAATATCTCCGCGGTTCCATCGCCGCCGTGCACTCCATCCTCCACCATTCCCTCTGCCCGGAGAGCATCTTCTTCCACCTGCTCGTCTCCGACGGGAACCTCCAAACCCTAGTGGAGTCCACGTTCCCGCAGTTGAAGTTCAAGGCGTACTACTTCGATCCGAACACCGTGGCCCACTTGATCTCTTCCTCCGTGCGGCAGGCGCTGGAGCAGCCTCTGAATTACGCGAGGAACTACCTCGGGGACCTTCTGGAGGGTTGCGTGGAGCGAGTGATTTACCTGGACTCGGATCTGGTGGTGGTGGACGACGTGGCGAAGCTGTGGGGGGCGAGTCTGGGGCCACGCGCCATCGGGGCGCCGGAGTACTGCCACGCGAACTTCACGAAGTACTTCACGGCGGGGTTCTGGGCGGAGCCGAGGTTGTCGGGGACGTTCGCGCGGCGGAGGGCGTGCTACTTCAACACGGGGGTGATGGTGATGGATCTGGCGCGGTGGAGGAAGGAGGGGTACACGAGGAGGATAGAGAGGTGGATGGAGATTCAGAAGAGTGGTAGGATCTACGAGCTCGGTTCCTTGCCGCCGTTTTTGCTGGTCTTCGCGGGACACGTGGCGCCCCTTGAGCACCGCTGGAACCAGCACGGTTTGGGCGGGGATAACGTCAACGGTAGTTGCCGTGACTTGCACCCTGGTCCGGTTAGTTTGTTGCATTGGTCCGGTAGCGGGAAGCCATGGCTACGTTTAAATTCGAAACGTCCCTGCCCTCTCGATGCTCTATGGGCTCCCTTTGACTTGTACGCACTCAGCTGA 1029 0.5928 MLRMTRFSGIFSAAMFIIIVLSPSLQSQAIRSSNRFSFRKAPPFRNADECAWISGTETTVCDPSLVHVAITLDVEYLRGSIAAVHSILHHSLCPESIFFHLLVSDGNLQTLVESTFPQLKFKAYYFDPNTVAHLISSSVRQALEQPLNYARNYLGDLLEGCVERVIYLDSDLVVVDDVAKLWGASLGPRAIGAPEYCHANFTKYFTAGFWAEPRLSGTFARRRACYFNTGVMVMDLARWRKEGYTRRIERWMEIQKSGRIYELGSLPPFLLVFAGHVAPLEHRWNQHGLGGDNVNGSCRDLHPGPVSLLHWSGSGKPWLRLNSKRPCPLDALWAPFDLYALS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0611 342 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 7 340 - -
Ssu4g0611 342 SUPERFAMILY Nucleotide-diphospho-sugar transferases 66 339 IPR029044 -
Ssu4g0611 342 Pfam Glycosyl transferase family 8 67 320 IPR002495 GO:0016757
Ssu4g0611 342 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 67 326 IPR029044 -
Ssu4g0611 342 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 6-RELATED 7 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0611 Ssu-Chr4 9764270 9765298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0611 1 340 Glycosyltransferase AT3G62660 72.702 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0611 - - gmx:100805221 622.083