LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g0592	ATGGCTCCTTCCCGTCGCAATACCAATGGTCGTTCACCTCTCGTCAATCAACAGCGTCAAATCACTTCCTTCTTCTCCAAACCCGCTTCCCCTTCTCCCTCTCCCACGCTCTCCAAAACGAACCAAAAACTAAACCCTAACAACATTTCGGAccctaaccctaaccctaaccctAGTCCCACCCCTCCCACTCCCTCACCTCTCAATCCCAAACCGCACAAGCCCCTTCTTCTCATCGGCGCTTCCTCCGTTTCGCCTTCTCTCTACGGCCAAGAGGTCGTTGGCAGAAGGATCAAGGTTTATTGGCCATTGGACAAAGCCTGGTACGAAGGTTCCGTCAAATCCTTCGATAGCCTCACTTCCAAGCACCTGGTTCGTTACGACGATGACGAAGAGGAATCCCTCGACCTCTCCAAGGAGAAGATCGAGTGGCCTCAGGAATCCTCTTCGAAGAAACTTAAACGCCTGCGTCGCGGCTTCCCCGCCGTTAGGAAGATGGTGATTGACGACGAAGAAGAAAGTCGCAaaggagaagatgaagatgataatgatgatgatgattccAACGATGAGGACTGGGAGAAGAATGGTGTATTGGAGGATCGGGATGCTGGGGATTTTGAAGAAGATACGGATTTAGAGGATGAAGATGATGTAGCAGAGAGGGGTAAAGGAAAAAAGCTTGAGCCTAAAAAGCGGAAACTGAGTGGAACGGAGAAACAAGAGCCTGCGAAAAAGAACAAGAGTGGAGTGGAAGTTGGTAAGGGAGCTTTCAAGCTCTCGGTATTGGAGCCTACGAGTAATTTGGAGAccatgtctttaaactttgCAGTTAAAAAGACATCTAATGGTGCTGAGAATGTTGTGATTACTGAGACTTCTGAAAGATTTGCATCTCGCGAAGCTCAGAAATTGCGCTTCCTGAAAGAAGATCGCAGGGATGCCAAGCGAAGACGACCAGGAGATGAAAATTATGATTCACGAACTCTCTACTTGCCTCCCGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCACATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAGCTTGACTTGCAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCAGAGAGGAATTTCTCGATGAACGTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTTGCAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGGGAGATATGTGCAGTGGTTACAAAAGGCACATTAATGGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCTGCATATTTGATGGCCCTGACCGAGCATCATGAAAATCATCCAAATGAAATTTTGGAGCATATCTATGGTGTTTGTATAGTTGATGTTGCCACAGGCAGAGTCATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGCCTTGTGCTGTATCTTATCTGAGATCAGGCCCGTTGAAATTGTGAAACCTGCTAAGCTACTCAGCGCTGAAACAGAGAGAGTACTGTTGAAGCATACCAGAAATCCTTTAGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTGTGGATCAATTGAAGAGAATTTACGGGAACACTAATGATGTTAGTGTTGAAGATAATGGGTTAGATTACCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGGTGATGACGGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAAACAGGCTTTTCTAGATGAGAGATTGCTTAGGTTTGCACAGTTTGAGTTACTTCCATGTTCTGGTTTTGGTGATCTTCCTTCAAAACCCTACATGGTTCTGGATTCGGCTGCCCTGGAGaatcttgagatttttgagaaTAGCAGGAATGGAGATTCTTCGGGCACGCTCTATGCCCAACTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCGAGACCATTATGTCATGTGGAGTCAATTATGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTCTGCACTAGAGTTTCGAAAAGCATTGTCCAAACTACCTGACATGGAGCGGTTGCTTGCACGCATCTTTTCCACTAGTGAAGCTACTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCAGCTAAGAAGCAACTGCAAGAGTTTATTTCAGCTCTGCGTGGTTGTGAACAGATGGCACAAGCATGCTCCTCACTTGGTGTCATTTTGAATCATATCAAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGGTCTTCCTGATGTTTGCATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGGCGTATAATACCTCATGAAGGAGTTGACACAGAGTATGACTCAGCCTGTAAGACGGTTAAAGAGATTGAGTCCAATTTATTGAAGCATCTCAAGGAACAAAGGAAACTACTTGGAGACACATCAATTGCTTATGTCAATATTGGAAAGGATGCATACTTACTGGAAGTGCCAGAAAATTTGTGTAGGAATATTCCTCGGGATTATGAACTGCGTTCATCCAGAAAAGGCTTCTTTAGGTACTGGActccaaatattaaaatttttttaagagagcTCTCCCAAGCTGAATTTGAAAGGGAGTCCTTGTTGAAAAGTACATTGCAGAGATTAATTGGGCGTTTTTGTGAACATCACACCAAGTGGAAACAGTTGGTGTCTGCAACTGCTGAACTGGATGTCTTCATCAGTTTAGCTATTGCCGGTGACTACTATGAAGGACCAACATGCAGACCTAGATTCGTAGGCACATTATGTACAAAAGAATCTCCTTACCTCCATGCTAAGAGTTTGGGACACCCAGTCCTTAGGAGTGATACCTTAGGCAAGGATGCCTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTAGCTTTATTCTGCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAAGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGCTTTGATTTGTCAACTGTTGACCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATCATGGCTGGCCAAAGTACATTTCTAACCGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTTGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACAGCAACTTCTGATGGGCAAGCCATTGCGGAATCAGTATTAGAACATCTTGTGCGGAAGGTGCAGTGTCGAGGATTGTTTTCTACCCACTATCATCGATTAGCTGTAGATTATCTCAAAGATCCCAAGGTCTCTCTCTGCCACATGGCATGCCAAGTTGGTGGTGGAAATGACGGTCTAGACGAAGTCACTTTTCTTTACAGGCTGACCCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGGATAGCTggACTTCCAACTTCTGTGCTTCAGAAGGCTGCTGCTAAGTCCAGAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGGTGTCTTCTGAAACAAACTCTCCCAATAAAAATTGGGTTGATGAGATAACAGTTATCATACAAAAATTGAACAACGTTGCTACAAATTTGAGTTGCCAGGAAACCATTTGGGTTAGATCCCTGAGTGAACTTCAGGATAAAGCAAGAGAACTAATGCAGCGATGTTAA	3864	0.4322	MAPSRRNTNGRSPLVNQQRQITSFFSKPASPSPSPTLSKTNQKLNPNNISDPNPNPNPSPTPPTPSPLNPKPHKPLLLIGASSVSPSLYGQEVVGRRIKVYWPLDKAWYEGSVKSFDSLTSKHLVRYDDDEEESLDLSKEKIEWPQESSSKKLKRLRRGFPAVRKMVIDDEEESRKGEDEDDNDDDDSNDEDWEKNGVLEDRDAGDFEEDTDLEDEDDVAERGKGKKLEPKKRKLSGTEKQEPAKKNKSGVEVGKGAFKLSVLEPTSNLETMSLNFAVKKTSNGAENVVITETSERFASREAQKLRFLKEDRRDAKRRRPGDENYDSRTLYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRCKEKGSKDKVVRREICAVVTKGTLMDGELLSANPEAAYLMALTEHHENHPNEILEHIYGVCIVDVATGRVILGQFKDDLECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRNPLVNELVPIVEFWDADKTVDQLKRIYGNTNDVSVEDNGLDYLPDVLLELVKTGDDGRSALSALGGALYYLKQAFLDERLLRFAQFELLPCSGFGDLPSKPYMVLDSAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESIMERQEAVAGLKGVNLPSALEFRKALSKLPDMERLLARIFSTSEATGRNANKVVLYEDAAKKQLQEFISALRGCEQMAQACSSLGVILNHIKSRQLHHLLTPGKGLPDVCMDLNHFKDAFDWVEANNSGRIIPHEGVDTEYDSACKTVKEIESNLLKHLKEQRKLLGDTSIAYVNIGKDAYLLEVPENLCRNIPRDYELRSSRKGFFRYWTPNIKIFLRELSQAEFERESLLKSTLQRLIGRFCEHHTKWKQLVSATAELDVFISLAIAGDYYEGPTCRPRFVGTLCTKESPYLHAKSLGHPVLRSDTLGKDAFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSTVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATCNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVSLCHMACQVGGGNDGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSREFEATYGKCRKVSSETNSPNKNWVDEITVIIQKLNNVATNLSCQETIWVRSLSELQDKARELMQRC	1287

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu4g0592	1287	Gene3D	DNA repair protein MutS, domain I	298	460	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	Gene3D	-	980	1258	IPR027417	-
Ssu4g0592	1287	SUPERFAMILY	DNA repair protein MutS, domain I	329	452	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	Coils	Coil	298	318	-	-
Ssu4g0592	1287	SMART	mutATP5	1029	1221	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	126	250	-	-
Ssu4g0592	1287	SUPERFAMILY	DNA repair protein MutS, domain III	651	972	IPR036187	-
Ssu4g0592	1287	Gene3D	MutS, connector domain	465	639	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	Gene3D	-	814	945	-	-
Ssu4g0592	1287	Gene3D	-	648	969	-	-
Ssu4g0592	1287	PIRSF	Msh6	2	1272	IPR017261	GO:0006298\|GO:0030983
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	51	72	-	-
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	218	249	-	-
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	203	217	-	-
Ssu4g0592	1287	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	306	1257	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	1	50	-	-
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	126	154	-	-
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	1	78	-	-
Ssu4g0592	1287	Pfam	MutS domain I	344	456	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	Pfam	MutS domain V	1033	1223	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	Pfam	MutS family domain IV	838	927	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	Pfam	MutS domain II	485	620	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	306	1257	-	-
Ssu4g0592	1287	Gene3D	-	91	144	-	-
Ssu4g0592	1287	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	992	1224	IPR027417	-
Ssu4g0592	1287	SMART	DNAend	668	1009	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	SUPERFAMILY	Tudor/PWWP/MBT	93	133	-	-
Ssu4g0592	1287	MobiDBLite	consensus disorder prediction	173	194	-	-
Ssu4g0592	1287	SMART	TUDOR_7	90	148	IPR002999	-
Ssu4g0592	1287	Pfam	MutS domain III	654	969	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Ssu4g0592	1287	SUPERFAMILY	DNA repair protein MutS, domain II	462	663	IPR036678	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g0592	Ssu-Chr4	9496907	9505755	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g0592	K08737		-	gmx:100811104	2163.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g0592	4	9496907	9505755	Ssu4g0592	4	9496907	9505755	ECH