Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0570 ATGGAAGATTTAGGAGGTACCCAGTTCGATGGCCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAGACTTCGCGCAGGCCTCGACCTGATTCACAGCCTGTTTCTGAAGGTCATGAAATGTCTCCCTTGTCGTCGACACCTTCAGAGGATGCTGGCAAGGTCTCTAGTGATGAGAATGTTGGTTACGATGCGAATTCCAAAAGAAAGGAATTCAATCTTAACCATTGTGTCTCTCAAACTTCTTCTGCTACTGGAGCCGAAGAggataaattacataaaaagattaaaaaggaCGGAGGGTTCCATGCGTTTTATAATAATGAGCCTGGACGGAGTGGTTTGCATAATAAACGCTGTAGTGAAGGCGTTCTTGCTCCAGCGAATTGGAAAGGTTCTAGCAAAGCGAAGGATAACTTGGATTCAGAGTCAAGAAATGTGGATTTGTATGGTGGAAGGAATCCTGAGAGTCTGAGTTTGGGCCAGATTGGTGGCTCTCAGGATGGATTGGGGAATGAGAACCGGGTTAAAAAGGTTAAACTCAAGGTTGGCGGGGTGACACGTACTATTCAAGCCAATTCAACAACCAATGGTGCTTCGGGAAGTGGATCAACAATGAAGAGCTCTCGTTCATCGGATGCCTCCAAACCACGCCAAAAGCAACAgAGTAATTCAGATGATAATAATTCTCCTTCTGATAAGAGGAGTGGTCTACAAGGCGTTCCGTGGAAGGATTTCTCAAGGGGTGGTTTTGGTCTTGGGAAGGAGGAATCATTGATGGCGAAGATTTCTGGAAAGAGCACATCTAGTAAGCTGGGAGACAAGTCTGAACCAGTTCGTAAGAGCAAGCGAGTACCAAAGAGACGTGTACTTGACGGGGAATTTGGTGACGATGGTGACGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACATCAAAAGTTTCTGCAGTCTATAGAGACGAAGAAGAATTAAGCAAGAAACAACGAAAACTATCTAGTGTCTCTAATATGGAAAATGCTGCCCCAACAAGGTCAGGCAAAGACAGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGACACAGATTATGAGGATGAAGAGGAGTCAGGGTCTGATGGTGAGCTTGAggataagaaaaagaagaaacagaGGAAGGAATCTGTTGATGTATTGATGGACAGTAAGAGGGAAATGACTCTCACGACTCGTCAACGGGCCCTTCAATCAAGCAAAGATGCCTCTGCATCTGGTGCTAGTTTAATTGAGTTTCCCAATGGATTACCACCTGCCCCGCCTAGAAAGCAAAAGGAGAAGCTTTCAGAGGTAGACCAGCAATTGAAGAAAGCTGAGGCTGCCCAGAGGCGTAGAATGCAAGTTGAGAAGGCTGCCAGAGAATCTGAGGCTGAAGCTATCAGAAAAATACTTGGTCAAGACTCCAgtaggaaaaagagagaagagaaaataaagaagcgcCAAGAAGAACTGGCACAGGAAAGGGCAGCCAATGCACAAATGCTTGCATCAAATACCATCAGATACACAATGGGTCCAACTGGAACAGTTGTGACTTTTCCTGAGGAAATGGGGCTTCCTAGCTTACTGAACTCCAAACCCGTCAGTTATCCCCCACCTCGCGAGAAGTGTGCCAGTCCATCTTGTACAAATCCTTATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGCTACAAGGCTGTCCAGGAGAAGGTGGCGGCTGAAACTACCTGTTGA 1770 0.4384 MEDLGGTQFDGLSNAVRRKRSQTSRRPRPDSQPVSEGHEMSPLSSTPSEDAGKVSSDENVGYDANSKRKEFNLNHCVSQTSSATGAEEDKLHKKIKKDGGFHAFYNNEPGRSGLHNKRCSEGVLAPANWKGSSKAKDNLDSESRNVDLYGGRNPESLSLGQIGGSQDGLGNENRVKKVKLKVGGVTRTIQANSTTNGASGSGSTMKSSRSSDASKPRQKQQSNSDDNNSPSDKRSGLQGVPWKDFSRGGFGLGKEESLMAKISGKSTSSKLGDKSEPVRKSKRVPKRRVLDGEFGDDGDEDDEIRYLEKLKTSKVSAVYRDEEELSKKQRKLSSVSNMENAAPTRSGKDSKKRSRSDRVYEDTDYEDEEESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQSSKDASASGASLIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQERAANAQMLASNTIRYTMGPTGTVVTFPEEMGLPSLLNSKPVSYPPPREKCASPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVAAETTC 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0570 589 MobiDBLite consensus disorder prediction 317 498 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 345 361 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 1 74 - -
Ssu4g0570 589 Pfam PAPA-1-like conserved region 446 530 IPR006880 GO:0031011
Ssu4g0570 589 MobiDBLite consensus disorder prediction 403 418 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 375 402 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 436 498 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 272 294 - -
Ssu4g0570 589 Pfam HIT zinc finger 546 577 IPR007529 -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 130 303 - -
Ssu4g0570 589 PANTHER INO80 COMPLEX SUBUNIT B 1 589 IPR029523 GO:0006338|GO:0031011
Ssu4g0570 589 Coils Coil 444 471 - -
Ssu4g0570 589 PANTHER HIT ZINC FINGER AND PAPA-1-LIKE DOMAIN-CONTAINING PROTEIN 1 589 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 37 53 - -
Ssu4g0570 589 SMART PAPA_1_2 445 530 IPR006880 GO:0031011
Ssu4g0570 589 Coils Coil 483 503 - -
Ssu4g0570 589 MobiDBLite consensus disorder prediction 186 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0570 Ssu-Chr4 9105392 9108426 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0570 - - gmx:100814323 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0570 4 9105392 9108426 Ssu4g0570 4 9105392 9108426 ECH