Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0566 ATGTCGATCAGAGATGCTTTTCTATACTTACTATTCATCGTAACTTATTCGATTTCAGCTGCTTCTGCTGATTCCATCTATGGCTGCGGTGGATTTGTCGAGGCGAGCTCGTCGTTGGTAAAGTCAAGGAAACAAGCTGATGCCAAATTGGATTATTCCGATGTCACGGTTGAGCTTCAAACTGTGGACGGACTGGTAAAGGATAGAACACAATGTGCTCCAAATGGATACTATTTTATTCCAGTATATGACAAGGGTtcctttgtaattaaaattaatggacCTGCAGGATGGACATGGGATCCAGAAAAGGTTCCTGTGGTGGTTGACAATAATGGTTGCAATGGCAATGAAGATGTAAACTTTCGTTTCACAGGGTTCACTATATCTGGTAGAGTTGTGGGAGCTGTAGGGGGAGAAGGCTGTTCAGTTAAAAATGGAGGTCCTTCAAATGTAAAAGTTGAACTATTGTCCCTTTCTGGGGATCTTGTCTCTTCAGTCTTAACTTCATCATCAGGGAGTTACTTGTTTACAAATATAATTCCAGGAAAATATGAGCTACGTGCTTCAAATCCTGATATGAAAGTTGAAGTTAAAGGTTCAACACAGGTCGAATTGGGCTTCGGAAATGGGTTAGTTGATGATGTTTTCTTTGTCTCTGGGTATAGTATCAGTGGATTTGTTGTTGCTCAGGGAAATCCAATATTAGGAGtccatattttcttatattcagATGATGTTTCTGAGGTAGAATGTTTGCAAGGTTCCGCTAATGGCCCACGACAAGGAGTAGCTCTCTGTCAAGCTGTATCCGACGCTGATGGAAAATTCACATTCAATTCAATACCTTGTGGAAGTTATGAACTTGTGCCCTACTACAAGGGTGAAAATACAGTGTTTGATGTTTCGCCACCCAGTGTCTCAGTTAATGTTAAGCATCAGCATGTAACGGTGCCTCAAAAATTTCAGGTAACTGGATTTTCTCTTGGAGGCCGCGTAGTTGATGGAAATGGCATGGGAGTGGAGGGGGTCAAAATCATAGTTGATGGTCATGAAAGGTCTATTACTGACAATCAAGGATATTACAAGCTTGATCAGgTTACATCCAAGCACTATACCATAGAGGCCCAAAAGGAGCATTACAAATTCAAGAAATTGGAGAAATATATgGTATTGCCAAATATGGCTTCAATAGAAGACATCAATGCCATTTCATACAATCTTTGTGGTTTGGTTAGGATGGTTAGTGGTGGTCTGAAAGCAAAGGTGGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAAGTTCTGCTTTGAGGTTCTTCCTGGTGAATATCGCTTGTCAGCCATTGCTGCTACTCCTGAGAATGCTGCTGGGCTCATGTTTGCTCCATCTTATATCGATGTTGTGGTCAAAAGTCCCCTGTTGAATATTGAATTTTCACAAGCTCTGGTCAATATTCATGGTGCTGTATCCTGCAAGGAGAAATGTGGTCCATTTGTCTCTGTTACTCTGGTGAGACAGGTTTATAAACATAATGAAGAGAGAAAGACAATTAGCTTGACCACCGAGAGTAGTGAATTTCTGTTTTCCGATGTTATTCCTGGAAAATACAGGCTTGAggtCAAACATAGTTCCCCTGAATCAGTGACCTTGGAAGATAATTGGTGCTGGGAGCAGAGCTTCATGGATGTAAATGTTGGCGCTGAGGACTTAGAAGGAatcttttttgttcaaaaaggCTACTGGGCCAATGTTATCTCCACTCACAATGTTGATGGTTACCTGACTCAACCCGATGGGTCAAatgtgaatttgaaaattcGGAAAGGTTCCCAGCATATATGTGTAGAACATCCTGGCGTACATGAATTTAGTTTTGTTGACTCGTGTATCTTCTTTGGGAGTTCATCGGTGAAAATTAATACATCTGATCAATCGcCCATCTATTTAACAGGAGAAAAGTTTCTTCTTAAAGGACAAATAAATGTGCAGTCTGGCTCACTTGATACATTGCCTGAGAATATAGTTGTTGATATTAAACATGACGGAGCTGGTGTTAGTGATTATGCTACAGCCACACTTAAGTCCCATGCGAAAGATCAAACAGATACTGCTATATTTGAGTATTCTGTTTGGGCCAATCTAGGAGAAAAGCTTACCTTTGTTCCTTGGGACTCAAGGAACGATGTGCAGAAGAAACTTCTATTTTATCCTAGAGAACATCAAGTATCAGTGACAGATGATAATTGTCAAGCTTATATTCCTACATTTTCTTGTCAACTGGGCGCATATATTGAAGGATCAGTTTCACCTCCTCTTTCTGATGTCCATATCAGAGTTTTTGCTGCTGGAGACAGCAGCATTACTGCACTTAAAAGTGGTGAATTAGTTCTTGAAACAGCCACTGGTACTGATGGTTCCTTTGTGGCAGGTCCTCTGTACGATGATATTGGTTACAATGTTGAGGCTTCAAAGCCTGGATATCATTTAAAACAAGTAGCGCCTCATTCCTTTACTTGTCAGAAGCTTAGTCAAATTTCAGTACACAtacatcacaaagaagatgctaAAGAGCCCATTCCTTCTGTTCTGTTATCTTTGAGTGGTGACAATGGTTATAGAAACAACTCGGTATCAGGGGCTGGGGGAACATTCCTGtttgataatttgtttcctGGAATGTTCTATTTGCGTCCTGTTTTGAAGGAGTATGCTTTCTTACCTCCAGCAGAGGCAATAGAGCTTGGGGCAGGGGAGTTCAGAGAAGTTATTTTCCAGGCCAAGCGTGTAGCTTACAGTGCTACAGGTGTAGTCACTCTGTTGTCTGGCCAACCCAAAGGAGAAGTTTCAGTTGAAGCCCGGTCAGAGTCAAAAGGCTATTTTGAGGAAACTGTGACAGATTCTTCTGGAAATTATCGTCTGAGAGGACTACTGCCTGATACTGTCTATGTTGTTAAAGTAGCTAAAAGGGATGTGGGCAGTTCTAATATAGAGCGTGCATCTCCAGATTCTATTGCTGTCAAGGTTGGAACTGAGGATATCAAGGGTTtggattttatagtttttgagGAGCCGGAAATGACAATTATAAGTTGCCACGTTGAAGGAAATGGTACAGATGAACTACAGAAACACCTGATGGTAGAAATCAGGTCAGCTAGTGACCTAACCAAGATAGAGTCAGTCTTTCCCCTGccaatttctaacttcttccAAGTGAAGGGCTTATCAAAGGGCAGACACCTTCTACAGCTTCAATCTGGTTTCCTATCAAGCTCACTTAAATTTGAATCTGATATCATTGAGGTCGACTTGGAGAAAAATGTTCAAACCCATGTGGGCCCACTGAGATACAGGATTGAAGATCAGCTGAAGCAGGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTGGGATTTCTAGTTGTTGCACTATTTATTAGCATGCCAAGATTGAAGGATTTGTACCAAGCCACAGTAGACATACCCACACCAGGACTCACTGCGGCTTCAAGAAAAGACGTGAAGAAGCCAATGTTGCGAAAGAAGACTTATTAA 3588 0.3986 MSIRDAFLYLLFIVTYSISAASADSIYGCGGFVEASSSLVKSRKQADAKLDYSDVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKINGPAGWTWDPEKVPVVVDNNGCNGNEDVNFRFTGFTISGRVVGAVGGEGCSVKNGGPSNVKVELLSLSGDLVSSVLTSSSGSYLFTNIIPGKYELRASNPDMKVEVKGSTQVELGFGNGLVDDVFFVSGYSISGFVVAQGNPILGVHIFLYSDDVSEVECLQGSANGPRQGVALCQAVSDADGKFTFNSIPCGSYELVPYYKGENTVFDVSPPSVSVNVKHQHVTVPQKFQVTGFSLGGRVVDGNGMGVEGVKIIVDGHERSITDNQGYYKLDQVTSKHYTIEAQKEHYKFKKLEKYMVLPNMASIEDINAISYNLCGLVRMVSGGLKAKVALTHGPDNVKPQKKQTDENGKFCFEVLPGEYRLSAIAATPENAAGLMFAPSYIDVVVKSPLLNIEFSQALVNIHGAVSCKEKCGPFVSVTLVRQVYKHNEERKTISLTTESSEFLFSDVIPGKYRLEVKHSSPESVTLEDNWCWEQSFMDVNVGAEDLEGIFFVQKGYWANVISTHNVDGYLTQPDGSNVNLKIRKGSQHICVEHPGVHEFSFVDSCIFFGSSSVKINTSDQSPIYLTGEKFLLKGQINVQSGSLDTLPENIVVDIKHDGAGVSDYATATLKSHAKDQTDTAIFEYSVWANLGEKLTFVPWDSRNDVQKKLLFYPREHQVSVTDDNCQAYIPTFSCQLGAYIEGSVSPPLSDVHIRVFAAGDSSITALKSGELVLETATGTDGSFVAGPLYDDIGYNVEASKPGYHLKQVAPHSFTCQKLSQISVHIHHKEDAKEPIPSVLLSLSGDNGYRNNSVSGAGGTFLFDNLFPGMFYLRPVLKEYAFLPPAEAIELGAGEFREVIFQAKRVAYSATGVVTLLSGQPKGEVSVEARSESKGYFEETVTDSSGNYRLRGLLPDTVYVVKVAKRDVGSSNIERASPDSIAVKVGTEDIKGLDFIVFEEPEMTIISCHVEGNGTDELQKHLMVEIRSASDLTKIESVFPLPISNFFQVKGLSKGRHLLQLQSGFLSSSLKFESDIIEVDLEKNVQTHVGPLRYRIEDQLKQELTPAPVFPLIVGFLVVALFISMPRLKDLYQATVDIPTPGLTAASRKDVKKPMLRKKTY 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0566 1195 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 7 1176 - -
Ssu4g0566 1195 PANTHER NODAL MODULATOR 1-RELATED 7 1176 - -
Ssu4g0566 1195 SUPERFAMILY Carboxypeptidase regulatory domain-like 329 392 IPR008969 -
Ssu4g0566 1195 SUPERFAMILY Cna protein B-type domain 131 197 - -
Ssu4g0566 1195 Gene3D Immunoglobulins 141 215 IPR013783 -
Ssu4g0566 1195 Gene3D - 329 405 - -
Ssu4g0566 1195 SUPERFAMILY Starch-binding domain-like 218 297 IPR013784 GO:0030246
Ssu4g0566 1195 SUPERFAMILY Cna protein B-type domain 866 918 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0566 - - ccaj:109814730 2238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0566 4 9045730 9067848 Ssu4g0566 4 9045730 9067848 ECH